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For: Fernández-Pozo N, Canales J, Guerrero-Fernández D, Villalobos DP, Díaz-Moreno SM, Bautista R, Flores-Monterroso A, Guevara MÁ, Perdiguero P, Collada C, Cervera MT, Soto A, Ordás R, Cantón FR, Avila C, Cánovas FM, Claros MG. EuroPineDB: a high-coverage web database for maritime pine transcriptome. BMC Genomics 2011;12:366. [PMID: 21762488 DOI: 10.1186/1471-2164-12-366] [Cited by in Crossref: 42] [Cited by in F6Publishing: 33] [Article Influence: 3.8] [Reference Citation Analysis]
Number Citing Articles
1 Carmona R, Zafra A, Seoane P, Castro AJ, Guerrero-Fernández D, Castillo-Castillo T, Medina-García A, Cánovas FM, Aldana-Montes JF, Navas-Delgado I, Alché Jde D, Claros MG. ReprOlive: a database with linked data for the olive tree (Olea europaea L.) reproductive transcriptome. Front Plant Sci 2015;6:625. [PMID: 26322066 DOI: 10.3389/fpls.2015.00625] [Cited by in Crossref: 30] [Cited by in F6Publishing: 22] [Article Influence: 4.3] [Reference Citation Analysis]
2 Rueda-lópez M, García-gutiérrez A, Cánovas FM, Ávila C. The family of Dof transcription factors in pine. Trees 2013;27:1547-57. [DOI: 10.1007/s00468-013-0903-z] [Cited by in Crossref: 10] [Cited by in F6Publishing: 4] [Article Influence: 1.1] [Reference Citation Analysis]
3 López de Heredia U, Vázquez-poletti JL. RNA-seq analysis in forest tree species: bioinformatic problems and solutions. Tree Genetics & Genomes 2016;12. [DOI: 10.1007/s11295-016-0995-x] [Cited by in Crossref: 20] [Cited by in F6Publishing: 8] [Article Influence: 3.3] [Reference Citation Analysis]
4 Carrasco A, Wegrzyn JL, Durán R, Fernández M, Donoso A, Rodriguez V, Neale D, Valenzuela S. Expression profiling in Pinus radiata infected with Fusarium circinatum. Tree Genetics & Genomes 2017;13. [DOI: 10.1007/s11295-017-1125-0] [Cited by in Crossref: 17] [Cited by in F6Publishing: 6] [Article Influence: 3.4] [Reference Citation Analysis]
5 Neale DB, Langley CH, Salzberg SL, Wegrzyn JL. Open access to tree genomes: the path to a better forest. Genome Biol 2013;14:120. [PMID: 23796049 DOI: 10.1186/gb-2013-14-6-120] [Cited by in Crossref: 23] [Cited by in F6Publishing: 21] [Article Influence: 2.6] [Reference Citation Analysis]
6 de Vega-Bartol JJ, Simões M, Lorenz WW, Rodrigues AS, Alba R, Dean JF, Miguel CM. Transcriptomic analysis highlights epigenetic and transcriptional regulation during zygotic embryo development of Pinus pinaster. BMC Plant Biol 2013;13:123. [PMID: 23987738 DOI: 10.1186/1471-2229-13-123] [Cited by in Crossref: 27] [Cited by in F6Publishing: 21] [Article Influence: 3.0] [Reference Citation Analysis]
7 Prunier J, Verta J, Mackay JJ. Conifer genomics and adaptation: at the crossroads of genetic diversity and genome function. New Phytol 2016;209:44-62. [DOI: 10.1111/nph.13565] [Cited by in Crossref: 43] [Cited by in F6Publishing: 30] [Article Influence: 6.1] [Reference Citation Analysis]
8 Basantani MK, Gupta D, Mehrotra R, Mehrotra S, Vaish S, Singh A. An update on bioinformatics resources for plant genomics research. Current Plant Biology 2017;11-12:33-40. [DOI: 10.1016/j.cpb.2017.12.002] [Cited by in Crossref: 6] [Cited by in F6Publishing: 1] [Article Influence: 1.2] [Reference Citation Analysis]
9 Zhao J, Xiong H, Wang J, Zhang H, Zhang L. Mining Myb transcription factors related to wood development in Larix olgensis. J For Res 2020;31:2453-61. [DOI: 10.1007/s11676-019-01051-3] [Cited by in Crossref: 2] [Article Influence: 0.7] [Reference Citation Analysis]
10 Canales J, Rueda-López M, Craven-Bartle B, Avila C, Cánovas FM. Novel insights into regulation of asparagine synthetase in conifers. Front Plant Sci 2012;3:100. [PMID: 22654888 DOI: 10.3389/fpls.2012.00100] [Cited by in Crossref: 28] [Cited by in F6Publishing: 25] [Article Influence: 2.8] [Reference Citation Analysis]
11 Bai T, Xu L, Xu M, Wang Z. Characterization of masson pine (Pinus massoniana Lamb.) microsatellite DNA by 454 genome shotgun sequencing. Tree Genetics & Genomes 2014;10:429-37. [DOI: 10.1007/s11295-013-0684-y] [Cited by in Crossref: 9] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
12 Seoane P, Espigares M, Carmona R, Polonio Á, Quintana J, Cretazzo E, Bota J, Pérez-García A, Dios Alché J, Gómez L, Claros MG. TransFlow: a modular framework for assembling and assessing accurate de novo transcriptomes in non-model organisms. BMC Bioinformatics 2018;19:416. [PMID: 30453874 DOI: 10.1186/s12859-018-2384-y] [Cited by in Crossref: 8] [Cited by in F6Publishing: 6] [Article Influence: 2.0] [Reference Citation Analysis]
13 Chancerel E, Lamy JB, Lesur I, Noirot C, Klopp C, Ehrenmann F, Boury C, Provost GL, Label P, Lalanne C, Léger V, Salin F, Gion JM, Plomion C. High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination. BMC Biol 2013;11:50. [PMID: 23597128 DOI: 10.1186/1741-7007-11-50] [Cited by in Crossref: 48] [Cited by in F6Publishing: 37] [Article Influence: 5.3] [Reference Citation Analysis]
14 Howe GT, Yu J, Knaus B, Cronn R, Kolpak S, Dolan P, Lorenz WW, Dean JF. A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation. BMC Genomics 2013;14:137. [PMID: 23445355 DOI: 10.1186/1471-2164-14-137] [Cited by in Crossref: 50] [Cited by in F6Publishing: 40] [Article Influence: 5.6] [Reference Citation Analysis]
15 Pfannebecker KC, Lange M, Rupp O, Becker A. An Evolutionary Framework for Carpel Developmental Control Genes. Mol Biol Evol 2017;34:330-48. [PMID: 28049761 DOI: 10.1093/molbev/msw229] [Cited by in Crossref: 5] [Article Influence: 1.0] [Reference Citation Analysis]
16 Benzekri H, Armesto P, Cousin X, Rovira M, Crespo D, Merlo MA, Mazurais D, Bautista R, Guerrero-Fernández D, Fernandez-Pozo N, Ponce M, Infante C, Zambonino JL, Nidelet S, Gut M, Rebordinos L, Planas JV, Bégout ML, Claros MG, Manchado M. De novo assembly, characterization and functional annotation of Senegalese sole (Solea senegalensis) and common sole (Solea solea) transcriptomes: integration in a database and design of a microarray. BMC Genomics 2014;15:952. [PMID: 25366320 DOI: 10.1186/1471-2164-15-952] [Cited by in Crossref: 61] [Cited by in F6Publishing: 53] [Article Influence: 7.6] [Reference Citation Analysis]
17 Cañas RA, Canales J, Gómez-Maldonado J, Ávila C, Cánovas FM. Transcriptome analysis in maritime pine using laser capture microdissection and 454 pyrosequencing. Tree Physiol 2014;34:1278-88. [PMID: 24391165 DOI: 10.1093/treephys/tpt113] [Cited by in Crossref: 23] [Cited by in F6Publishing: 20] [Article Influence: 2.9] [Reference Citation Analysis]
18 Pérez-gonzález A, Marconi M, Cobo-simón I, Méndez-cea B, Perdiguero P, Linacero R, Linares JC, Gallego FJ. Abies pinsapo Boiss. Transcriptome Sequencing and Molecular Marker Detection: A Novel Genetic Resources for a Relict Mediterranean Fir. Forest Science 2018. [DOI: 10.1093/forsci/fxy022] [Cited by in Crossref: 1] [Article Influence: 0.3] [Reference Citation Analysis]
19 Howe GT, Yu J, Knaus B, Cronn R, Kolpak S, Dolan P, Lorenz WW, Dean JF. A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation. BMC Genomics 2013;14:137. [PMID: 23445355 DOI: 10.1186/1471-2164-14-137] [Cited by in Crossref: 51] [Cited by in F6Publishing: 1] [Article Influence: 5.7] [Reference Citation Analysis]
20 Zhang Y, Zhang S, Han S, Li X, Qi L. Transcriptome profiling and in silico analysis of somatic embryos in Japanese larch (Larix leptolepis). Plant Cell Rep 2012;31:1637-57. [DOI: 10.1007/s00299-012-1277-1] [Cited by in Crossref: 38] [Cited by in F6Publishing: 29] [Article Influence: 3.8] [Reference Citation Analysis]
21 Schenck CA, Holland CK, Schneider MR, Men Y, Lee SG, Jez JM, Maeda HA. Molecular basis of the evolution of alternative tyrosine biosynthetic routes in plants. Nat Chem Biol 2017;13:1029-35. [PMID: 28671678 DOI: 10.1038/nchembio.2414] [Cited by in Crossref: 30] [Cited by in F6Publishing: 25] [Article Influence: 6.0] [Reference Citation Analysis]
22 Carvalho A, Graça C, Carocha V, Pêra S, Lousada JL, Lima-brito J, Paiva JAP. An improved total RNA isolation from secondary tissues of woody species for coding and non-coding gene expression analyses. Wood Sci Technol 2015;49:647-58. [DOI: 10.1007/s00226-015-0709-9] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.1] [Reference Citation Analysis]
23 zu Castell W, Ernst D. Experimental ‘omics’ data in tree research: facing complexity. Trees 2012;26:1723-35. [DOI: 10.1007/s00468-012-0777-5] [Cited by in Crossref: 12] [Cited by in F6Publishing: 7] [Article Influence: 1.2] [Reference Citation Analysis]
24 Craven-Bartle B, Pascual MB, Cánovas FM, Avila C. A Myb transcription factor regulates genes of the phenylalanine pathway in maritime pine. Plant J 2013;74:755-66. [PMID: 23451763 DOI: 10.1111/tpj.12158] [Cited by in Crossref: 46] [Cited by in F6Publishing: 40] [Article Influence: 5.1] [Reference Citation Analysis]
25 Claros MG, Bautista R, Guerrero-Fernández D, Benzerki H, Seoane P, Fernández-Pozo N. Why assembling plant genome sequences is so challenging. Biology (Basel) 2012;1:439-59. [PMID: 24832233 DOI: 10.3390/biology1020439] [Cited by in Crossref: 70] [Cited by in F6Publishing: 51] [Article Influence: 7.0] [Reference Citation Analysis]
26 Lorenz WW, Ayyampalayam S, Bordeaux JM, Howe GT, Jermstad KD, Neale DB, Rogers DL, Dean JFD. Conifer DBMagic: a database housing multiple de novo transcriptome assemblies for 12 diverse conifer species. Tree Genetics & Genomes 2012;8:1477-85. [DOI: 10.1007/s11295-012-0547-y] [Cited by in Crossref: 35] [Cited by in F6Publishing: 15] [Article Influence: 3.5] [Reference Citation Analysis]
27 Niu SH, Li ZX, Yuan HW, Chen XY, Li Y, Li W. Transcriptome characterisation of Pinus tabuliformis and evolution of genes in the Pinus phylogeny. BMC Genomics 2013;14:263. [PMID: 23597112 DOI: 10.1186/1471-2164-14-263] [Cited by in Crossref: 41] [Cited by in F6Publishing: 27] [Article Influence: 4.6] [Reference Citation Analysis]
28 Mackay J, Dean JFD, Plomion C, Peterson DG, Cánovas FM, Pavy N, Ingvarsson PK, Savolainen O, Guevara MÁ, Fluch S, Vinceti B, Abarca D, Díaz-sala C, Cervera M. Towards decoding the conifer giga-genome. Plant Mol Biol 2012;80:555-69. [DOI: 10.1007/s11103-012-9961-7] [Cited by in Crossref: 66] [Cited by in F6Publishing: 55] [Article Influence: 6.6] [Reference Citation Analysis]
29 Visser EA, Wegrzyn JL, Steenkmap ET, Myburg AA, Naidoo S. Combined de novo and genome guided assembly and annotation of the Pinus patula juvenile shoot transcriptome. BMC Genomics 2015;16:1057. [PMID: 26652261 DOI: 10.1186/s12864-015-2277-7] [Cited by in Crossref: 32] [Cited by in F6Publishing: 27] [Article Influence: 4.6] [Reference Citation Analysis]
30 Telfer E, Graham N, Macdonald L, Sturrock S, Wilcox P, Stanbra L. Approaches to variant discovery for conifer transcriptome sequencing. PLoS One 2018;13:e0205835. [PMID: 30395612 DOI: 10.1371/journal.pone.0205835] [Cited by in Crossref: 8] [Cited by in F6Publishing: 6] [Article Influence: 2.0] [Reference Citation Analysis]
31 Mann IK, Wegrzyn JL, Rajora OP. Generation, functional annotation and comparative analysis of black spruce (Picea mariana) ESTs: an important conifer genomic resource. BMC Genomics 2013;14:702. [PMID: 24119028 DOI: 10.1186/1471-2164-14-702] [Cited by in Crossref: 7] [Cited by in F6Publishing: 5] [Article Influence: 0.8] [Reference Citation Analysis]
32 Zhao YJ, Cao Y, Wang J, Xiong Z. Transcriptome sequencing of Pinus kesiya var. langbianensis and comparative analysis in the Pinus phylogeny. BMC Genomics 2018;19:725. [PMID: 30285615 DOI: 10.1186/s12864-018-5127-6] [Cited by in Crossref: 6] [Cited by in F6Publishing: 2] [Article Influence: 1.5] [Reference Citation Analysis]
33 Santos CS, Pinheiro M, Silva AI, Egas C, Vasconcelos MW. Searching for resistance genes to Bursaphelenchus xylophilus using high throughput screening. BMC Genomics 2012;13:599. [PMID: 23134679 DOI: 10.1186/1471-2164-13-599] [Cited by in Crossref: 34] [Cited by in F6Publishing: 23] [Article Influence: 3.4] [Reference Citation Analysis]
34 Durán R, Rodriguez V, Carrasco A, Neale D, Balocchi C, Valenzuela S. SNP discovery in radiata pine using a de novo transcriptome assembly. Trees 2019;33:1505-11. [DOI: 10.1007/s00468-019-01875-w] [Cited by in Crossref: 3] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
35 Perdiguero P, Collada C, Barbero Mdel C, García Casado G, Cervera MT, Soto A. Identification of water stress genes in Pinus pinaster Ait. by controlled progressive stress and suppression-subtractive hybridization. Plant Physiol Biochem 2012;50:44-53. [PMID: 22099518 DOI: 10.1016/j.plaphy.2011.09.022] [Cited by in Crossref: 20] [Cited by in F6Publishing: 18] [Article Influence: 1.8] [Reference Citation Analysis]
36 Hernández Javier L, Benzekri H, Gut M, Claros MG, van Bergeijk S, Cañavate JP, Manchado M. Characterization of Iodine-Related Molecular Processes in the Marine Microalga Tisochrysis lutea (Haptophyta). Front Mar Sci 2018;5:134. [DOI: 10.3389/fmars.2018.00134] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 0.8] [Reference Citation Analysis]
37 Wegrzyn JL, Liechty JD, Stevens KA, Wu LS, Loopstra CA, Vasquez-Gross HA, Dougherty WM, Lin BY, Zieve JJ, Martínez-García PJ, Holt C, Yandell M, Zimin AV, Yorke JA, Crepeau MW, Puiu D, Salzberg SL, Dejong PJ, Mockaitis K, Main D, Langley CH, Neale DB. Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation. Genetics 2014;196:891-909. [PMID: 24653211 DOI: 10.1534/genetics.113.159996] [Cited by in Crossref: 137] [Cited by in F6Publishing: 115] [Article Influence: 17.1] [Reference Citation Analysis]
38 Olsson S, Lorenzo Z, Zabal-Aguirre M, Piotti A, Vendramin GG, González-Martínez SC, Grivet D. Evolutionary history of the mediterranean Pinus halepensis-brutia species complex using gene-resequencing and transcriptomic approaches. Plant Mol Biol 2021;106:367-80. [PMID: 33934278 DOI: 10.1007/s11103-021-01155-7] [Reference Citation Analysis]
39 Canales J, Bautista R, Label P, Gómez-maldonado J, Lesur I, Fernández-pozo N, Rueda-lópez M, Guerrero-fernández D, Castro-rodríguez V, Benzekri H, Cañas RA, Guevara M, Rodrigues A, Seoane P, Teyssier C, Morel A, Ehrenmann F, Le Provost G, Lalanne C, Noirot C, Klopp C, Reymond I, García-gutiérrez A, Trontin J, Lelu-walter M, Miguel C, Cervera MT, Cantón FR, Plomion C, Harvengt L, Avila C, Gonzalo Claros M, Cánovas FM. De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology. Plant Biotechnol J 2014;12:286-99. [DOI: 10.1111/pbi.12136] [Cited by in Crossref: 81] [Cited by in F6Publishing: 70] [Article Influence: 9.0] [Reference Citation Analysis]