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For: Boissy R, Ahmed A, Janto B, Earl J, Hall BG, Hogg JS, Pusch GD, Hiller LN, Powell E, Hayes J, Yu S, Kathju S, Stoodley P, Post JC, Ehrlich GD, Hu FZ. Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae Using a modification of the finite supragenome model. BMC Genomics 2011;12. [DOI: 10.1186/1471-2164-12-187] [Cited by in Crossref: 42] [Cited by in F6Publishing: 39] [Article Influence: 3.8] [Reference Citation Analysis]
Number Citing Articles
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2 Broadbent JR, Neeno-Eckwall EC, Stahl B, Tandee K, Cai H, Morovic W, Horvath P, Heidenreich J, Perna NT, Barrangou R, Steele JL. Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation. BMC Genomics 2012;13:533. [PMID: 23035691 DOI: 10.1186/1471-2164-13-533] [Cited by in Crossref: 101] [Cited by in F6Publishing: 83] [Article Influence: 10.1] [Reference Citation Analysis]
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4 Bajaj JS, O'Leary JG, Reddy KR, Wong F, Olson JC, Subramanian RM, Brown G, Noble NA, Thacker LR, Kamath PS; NACSELD. Second infections independently increase mortality in hospitalized patients with cirrhosis: the North American consortium for the study of end-stage liver disease (NACSELD) experience. Hepatology 2012;56:2328-35. [PMID: 22806618 DOI: 10.1002/hep.25947] [Cited by in Crossref: 264] [Cited by in F6Publishing: 245] [Article Influence: 26.4] [Reference Citation Analysis]
5 Kress-Bennett JM, Hiller NL, Eutsey RA, Powell E, Longwell MJ, Hillman T, Blackwell T, Byers B, Mell JC, Post JC, Hu FZ, Ehrlich GD, Janto BA. Identification and Characterization of msf, a Novel Virulence Factor in Haemophilus influenzae. PLoS One 2016;11:e0149891. [PMID: 26977929 DOI: 10.1371/journal.pone.0149891] [Cited by in Crossref: 11] [Cited by in F6Publishing: 9] [Article Influence: 1.8] [Reference Citation Analysis]
6 McCarthy CGP, Fitzpatrick DA. Pan-genome analyses of model fungal species. Microb Genom 2019;5. [PMID: 30714895 DOI: 10.1099/mgen.0.000243] [Cited by in Crossref: 22] [Cited by in F6Publishing: 20] [Article Influence: 7.3] [Reference Citation Analysis]
7 Silva JG, Araujo WJ, Leite EL, Dias LM, Vasconcelos PC, Silva NMV, Oliveira RP, Sena MJ, Oliveira CJB, Mota RA. First report of a livestock-associated methicillin-resistant Staphylococcus aureus ST126 harbouring the mecC variant in Brazil. Transbound Emerg Dis 2021;68:1019-25. [PMID: 32762020 DOI: 10.1111/tbed.13771] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
8 Ahmed A, Earl J, Retchless A, Hillier SL, Rabe LK, Cherpes TL, Powell E, Janto B, Eutsey R, Hiller NL, Boissy R, Dahlgren ME, Hall BG, Costerton JW, Post JC, Hu FZ, Ehrlich GD. Comparative genomic analyses of 17 clinical isolates of Gardnerella vaginalis provide evidence of multiple genetically isolated clades consistent with subspeciation into genovars. J Bacteriol 2012;194:3922-37. [PMID: 22609915 DOI: 10.1128/JB.00056-12] [Cited by in Crossref: 115] [Cited by in F6Publishing: 71] [Article Influence: 11.5] [Reference Citation Analysis]
9 Power PM, Bentley SD, Parkhill J, Moxon ER, Hood DW. Investigations into genome diversity of Haemophilus influenzae using whole genome sequencing of clinical isolates and laboratory transformants. BMC Microbiol 2012;12:273. [PMID: 23176117 DOI: 10.1186/1471-2180-12-273] [Cited by in Crossref: 29] [Cited by in F6Publishing: 24] [Article Influence: 2.9] [Reference Citation Analysis]
10 Vernikos GS. A Review of Pangenome Tools and Recent Studies. In: Tettelin H, Medini D, editors. The Pangenome. Cham: Springer International Publishing; 2020. pp. 89-112. [DOI: 10.1007/978-3-030-38281-0_4] [Cited by in Crossref: 5] [Cited by in F6Publishing: 1] [Article Influence: 2.5] [Reference Citation Analysis]
11 Santos-Cortez RLP, Bhutta MF, Earl JP, Hafrén L, Jennings M, Mell JC, Pichichero ME, Ryan AF, Tateossian H, Ehrlich GD. Panel 3: Genomics, precision medicine and targeted therapies. Int J Pediatr Otorhinolaryngol 2020;130 Suppl 1:109835. [PMID: 32007292 DOI: 10.1016/j.ijporl.2019.109835] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
12 Li L, Liu Z, Zhou Z, Zhang M, Meng D, Liu X, Huang Y, Li X, Jiang Z, Zhong S, Drewniak L, Yang Z, Li Q, Liu Y, Nan X, Jiang B, Jiang C, Yin H. Comparative Genomics Provides Insights into the Genetic Diversity and Evolution of the DPANN Superphylum. mSystems 2021;6:e0060221. [PMID: 34254817 DOI: 10.1128/mSystems.00602-21] [Reference Citation Analysis]
13 Whitby PW, VanWagoner TM, Seale TW, Morton DJ, Stull TL. Comparison of transcription of the Haemophilus influenzae iron/heme modulon genes in vitro and in vivo in the chinchilla middle ear. BMC Genomics 2013;14:925. [PMID: 24373462 DOI: 10.1186/1471-2164-14-925] [Cited by in Crossref: 16] [Cited by in F6Publishing: 15] [Article Influence: 1.8] [Reference Citation Analysis]
14 Potts CC, Topaz N, Rodriguez-Rivera LD, Hu F, Chang HY, Whaley MJ, Schmink S, Retchless AC, Chen A, Ramos E, Doho GH, Wang X. Genomic characterization of Haemophilus influenzae: a focus on the capsule locus. BMC Genomics 2019;20:733. [PMID: 31606037 DOI: 10.1186/s12864-019-6145-8] [Cited by in Crossref: 8] [Cited by in F6Publishing: 7] [Article Influence: 2.7] [Reference Citation Analysis]
15 Murphy TF, Chonmaitree T, Barenkamp S, Kyd J, Nokso-Koivisto J, Patel JA, Heikkinen T, Yamanaka N, Ogra P, Swords WE, Sih T, Pettigrew MM. Panel 5: Microbiology and immunology panel. Otolaryngol Head Neck Surg 2013;148:E64-89. [PMID: 23536533 DOI: 10.1177/0194599812459636] [Cited by in Crossref: 11] [Cited by in F6Publishing: 10] [Article Influence: 1.2] [Reference Citation Analysis]
16 Valot B, Guyeux C, Rolland JY, Mazouzi K, Bertrand X, Hocquet D. What It Takes to Be a Pseudomonas aeruginosa? The Core Genome of the Opportunistic Pathogen Updated. PLoS One 2015;10:e0126468. [PMID: 25961859 DOI: 10.1371/journal.pone.0126468] [Cited by in Crossref: 65] [Cited by in F6Publishing: 50] [Article Influence: 9.3] [Reference Citation Analysis]
17 Kallick E, Nistico L, Longwell M, Byers B, Cartieri F, Kreft R, Edington H. Resistance of Synthetic and Biologic Surgical Meshes to Methicillin-Resistant Staphylococcus aureus Biofilm: An In Vitro Investigation. Int J Biomater 2019;2019:1063643. [PMID: 31001340 DOI: 10.1155/2019/1063643] [Reference Citation Analysis]
18 Kadam A, Janto B, Eutsey R, Earl JP, Powell E, Dahlgren ME, Hu FZ, Ehrlich GD, Hiller NL. Streptococcus pneumoniae Supragenome Hybridization Arrays for Profiling of Genetic Content and Gene Expression. Curr Protoc Microbiol 2015;36:9D.4.1-9D.4.20. [PMID: 25641101 DOI: 10.1002/9780471729259.mc09d04s36] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.4] [Reference Citation Analysis]
19 Eutsey RA, Hiller NL, Earl JP, Janto BA, Dahlgren ME, Ahmed A, Powell E, Schultz MP, Gilsdorf JR, Zhang L, Smith A, Murphy TF, Sethi S, Shen K, Post JC, Hu FZ, Ehrlich GD. Design and validation of a supragenome array for determination of the genomic content of Haemophilus influenzae isolates. BMC Genomics 2013;14:484. [PMID: 23865594 DOI: 10.1186/1471-2164-14-484] [Cited by in Crossref: 13] [Cited by in F6Publishing: 12] [Article Influence: 1.4] [Reference Citation Analysis]
20 Botelho J, Grosso F, Peixe L. Antibiotic resistance in Pseudomonas aeruginosa - Mechanisms, epidemiology and evolution. Drug Resist Updat 2019;44:100640. [PMID: 31492517 DOI: 10.1016/j.drup.2019.07.002] [Cited by in Crossref: 77] [Cited by in F6Publishing: 62] [Article Influence: 25.7] [Reference Citation Analysis]
21 Stoodley P, Sidhu S, Nistico L, Mather M, Boucek A, Hall-stoodley L, Kathju S. Kinetics and morphology of polymicrobial biofilm formation on polypropylene mesh. FEMS Immunol Med Microbiol 2012;65:283-90. [DOI: 10.1111/j.1574-695x.2012.00948.x] [Cited by in Crossref: 16] [Cited by in F6Publishing: 6] [Article Influence: 1.6] [Reference Citation Analysis]
22 Chaves-Moreno D, Wos-Oxley ML, Jáuregui R, Medina E, Oxley AP, Pieper DH. Application of a Novel "Pan-Genome"-Based Strategy for Assigning RNAseq Transcript Reads to Staphylococcus aureus Strains. PLoS One 2015;10:e0145861. [PMID: 26717500 DOI: 10.1371/journal.pone.0145861] [Cited by in Crossref: 7] [Cited by in F6Publishing: 6] [Article Influence: 1.0] [Reference Citation Analysis]
23 Lobkovsky AE, Wolf YI, Koonin EV. Estimation of prokaryotic supergenome size and composition from gene frequency distributions. BMC Genomics 2014;15 Suppl 6:S14. [PMID: 25572821 DOI: 10.1186/1471-2164-15-S6-S14] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 0.8] [Reference Citation Analysis]
24 Wood S, Zhu K, Surujon D, Rosconi F, Ortiz-marquez JC, van Opijnen T. A Pangenomic Perspective on the Emergence, Maintenance, and Predictability of Antibiotic Resistance. In: Tettelin H, Medini D, editors. The Pangenome. Cham: Springer International Publishing; 2020. pp. 169-202. [DOI: 10.1007/978-3-030-38281-0_8] [Reference Citation Analysis]
25 Earl JP, de Vries SP, Ahmed A, Powell E, Schultz MP, Hermans PW, Hill DJ, Zhou Z, Constantinidou CI, Hu FZ, Bootsma HJ, Ehrlich GD. Comparative Genomic Analyses of the Moraxella catarrhalis Serosensitive and Seroresistant Lineages Demonstrate Their Independent Evolution. Genome Biol Evol 2016;8:955-74. [PMID: 26912404 DOI: 10.1093/gbe/evw039] [Cited by in Crossref: 13] [Cited by in F6Publishing: 12] [Article Influence: 2.2] [Reference Citation Analysis]
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27 Hammond JA, Gordon EA, Socarras KM, Chang Mell J, Ehrlich GD. Beyond the pan-genome: current perspectives on the functional and practical outcomes of the distributed genome hypothesis. Biochem Soc Trans 2020;48:2437-55. [PMID: 33245329 DOI: 10.1042/BST20190713] [Reference Citation Analysis]
28 Becker K, Skov RL, von Eiff C. Staphylococcus , Micrococcus , and Other Catalase-Positive Cocci. In: Jorgensen JH, Carroll KC, Funke G, Pfaller MA, Landry ML, Richter SS, Warnock DW, editors. Manual of Clinical Microbiology. Washington: ASM Press; 2015. pp. 354-82. [DOI: 10.1128/9781555817381.ch21] [Cited by in Crossref: 19] [Cited by in F6Publishing: 5] [Article Influence: 2.7] [Reference Citation Analysis]
29 Vernikos G, Medini D, Riley DR, Tettelin H. Ten years of pan-genome analyses. Curr Opin Microbiol 2015;23:148-54. [PMID: 25483351 DOI: 10.1016/j.mib.2014.11.016] [Cited by in Crossref: 273] [Cited by in F6Publishing: 204] [Article Influence: 34.1] [Reference Citation Analysis]
30 Moleres J, Fernández-Calvet A, Ehrlich RL, Martí S, Pérez-Regidor L, Euba B, Rodríguez-Arce I, Balashov S, Cuevas E, Liñares J, Ardanuy C, Martín-Santamaría S, Ehrlich GD, Mell JC, Garmendia J. Antagonistic Pleiotropy in the Bifunctional Surface Protein FadL (OmpP1) during Adaptation of Haemophilus influenzae to Chronic Lung Infection Associated with Chronic Obstructive Pulmonary Disease. mBio 2018;9:e01176-18. [PMID: 30254117 DOI: 10.1128/mBio.01176-18] [Cited by in Crossref: 20] [Cited by in F6Publishing: 11] [Article Influence: 5.0] [Reference Citation Analysis]
31 Mann RA, Smits TH, Bühlmann A, Blom J, Goesmann A, Frey JE, Plummer KM, Beer SV, Luck J, Duffy B, Rodoni B. Comparative genomics of 12 strains of Erwinia amylovora identifies a pan-genome with a large conserved core. PLoS One 2013;8:e55644. [PMID: 23409014 DOI: 10.1371/journal.pone.0055644] [Cited by in Crossref: 59] [Cited by in F6Publishing: 42] [Article Influence: 6.6] [Reference Citation Analysis]
32 Zhang L, Xie J, Patel M, Bakhtyar A, Ehrlich GD, Ahmed A, Earl J, Marrs CF, Clemans D, Murphy TF, Gilsdorf JR. Nontypeable Haemophilus influenzae genetic islands associated with chronic pulmonary infection. PLoS One 2012;7:e44730. [PMID: 22970300 DOI: 10.1371/journal.pone.0044730] [Cited by in Crossref: 20] [Cited by in F6Publishing: 18] [Article Influence: 2.0] [Reference Citation Analysis]
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35 Janto BA, Hiller NL, Eutsey RA, Dahlgren ME, Earl JP, Powell E, Ahmed A, Hu FZ, Ehrlich GD. Development and validation of an Haemophilus influenzae supragenome hybridization (SGH) array for transcriptomic analyses. PLoS One 2014;9:e105493. [PMID: 25290153 DOI: 10.1371/journal.pone.0105493] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.4] [Reference Citation Analysis]
36 Motyka-Pomagruk A, Zoledowska S, Misztak AE, Sledz W, Mengoni A, Lojkowska E. Comparative genomics and pangenome-oriented studies reveal high homogeneity of the agronomically relevant enterobacterial plant pathogen Dickeya solani. BMC Genomics 2020;21:449. [PMID: 32600255 DOI: 10.1186/s12864-020-06863-w] [Cited by in Crossref: 5] [Cited by in F6Publishing: 2] [Article Influence: 2.5] [Reference Citation Analysis]
37 Zhang X, Liu X, Yang F, Chen L. Pan-Genome Analysis Links the Hereditary Variation of Leptospirillum ferriphilum With Its Evolutionary Adaptation. Front Microbiol 2018;9:577. [PMID: 29636744 DOI: 10.3389/fmicb.2018.00577] [Cited by in Crossref: 10] [Cited by in F6Publishing: 7] [Article Influence: 2.5] [Reference Citation Analysis]
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39 Qin QL, Xie BB, Yu Y, Shu YL, Rong JC, Zhang YJ, Zhao DL, Chen XL, Zhang XY, Chen B, Zhou BC, Zhang YZ. Comparative genomics of the marine bacterial genus Glaciecola reveals the high degree of genomic diversity and genomic characteristic for cold adaptation. Environ Microbiol 2014;16:1642-53. [PMID: 25009843 DOI: 10.1111/1462-2920.12318] [Cited by in Crossref: 51] [Cited by in F6Publishing: 47] [Article Influence: 6.4] [Reference Citation Analysis]
40 Tsang RSW, Shuel M, Ahmad T, Hayden K, Knox N, Van Domselaar G, Hoang L, Tyrrell GJ, Minion J, Van Caeseele P, Kus JV, Ulanova M, Lefebvre B, Haldane D, Garceau R, German G, Zahariadis G, Hanley B, Kandola K, Patterson M. Whole genome sequencing to study the phylogenetic structure of serotype a Haemophilus influenzae recovered from patients in Canada. Can J Microbiol 2020;66:99-110. [PMID: 31661630 DOI: 10.1139/cjm-2019-0406] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.7] [Reference Citation Analysis]