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5 Melville CM, Scott KP, Mercer DK, Flint HJ. Novel tetracycline resistance gene, tet(32), in the Clostridium-related human colonic anaerobe K10 and its transmission in vitro to the rumen anaerobe Butyrivibrio fibrisolvens. Antimicrob Agents Chemother 2001;45:3246-9. [PMID: 11600392 DOI: 10.1128/AAC.45.11.3246-3249.2001] [Cited by in Crossref: 54] [Cited by in F6Publishing: 30] [Article Influence: 2.7] [Reference Citation Analysis]
6 Loverdos K, Bellos G, Kokolatou L, Vasileiadis I, Giamarellos E, Pecchiari M, Koulouris N, Koutsoukou A, Rovina N. Lung Microbiome in Asthma: Current Perspectives. J Clin Med 2019;8:E1967. [PMID: 31739446 DOI: 10.3390/jcm8111967] [Cited by in Crossref: 16] [Cited by in F6Publishing: 13] [Article Influence: 5.3] [Reference Citation Analysis]
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9 Sobhani I, Tap J, Roudot-Thoraval F, Roperch JP, Letulle S, Langella P, Corthier G, Tran Van Nhieu J, Furet JP. Microbial dysbiosis in colorectal cancer (CRC) patients. PLoS One. 2011;6:e16393. [PMID: 21297998 DOI: 10.1371/journal.pone.0016393] [Cited by in Crossref: 487] [Cited by in F6Publishing: 451] [Article Influence: 44.3] [Reference Citation Analysis]
10 Gérard P, Lepercq P, Leclerc M, Gavini F, Raibaud P, Juste C. Bacteroides sp. strain D8, the first cholesterol-reducing bacterium isolated from human feces. Appl Environ Microbiol 2007;73:5742-9. [PMID: 17616613 DOI: 10.1128/AEM.02806-06] [Cited by in Crossref: 72] [Cited by in F6Publishing: 28] [Article Influence: 4.8] [Reference Citation Analysis]
11 Chowdhury S, Fong SS. Computational Modeling of the Human Microbiome. Microorganisms 2020;8:E197. [PMID: 32023941 DOI: 10.3390/microorganisms8020197] [Cited by in Crossref: 7] [Cited by in F6Publishing: 5] [Article Influence: 3.5] [Reference Citation Analysis]
12 Tamboli CP, Neut C, Desreumaux P, Colombel JF. Dysbiosis in inflammatory bowel disease. Gut 2004;53:1-4. [PMID: 14684564 DOI: 10.1136/gut.53.1.1] [Cited by in Crossref: 439] [Cited by in F6Publishing: 402] [Article Influence: 24.4] [Reference Citation Analysis]
13 Zoetendal EG, von Wright A, Vilpponen-Salmela T, Ben-Amor K, Akkermans AD, de Vos WM. Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces. Appl Environ Microbiol 2002;68:3401-7. [PMID: 12089021 DOI: 10.1128/AEM.68.7.3401-3407.2002] [Cited by in Crossref: 557] [Cited by in F6Publishing: 282] [Article Influence: 27.9] [Reference Citation Analysis]
14 Layton A, McKay L, Williams D, Garrett V, Gentry R, Sayler G. Development of Bacteroides 16S rRNA gene TaqMan-based real-time PCR assays for estimation of total, human, and bovine fecal pollution in water. Appl Environ Microbiol 2006;72:4214-24. [PMID: 16751534 DOI: 10.1128/AEM.01036-05] [Cited by in Crossref: 366] [Cited by in F6Publishing: 122] [Article Influence: 22.9] [Reference Citation Analysis]
15 Hong PY, Wu JH, Liu WT. Relative abundance of Bacteroides spp. in stools and wastewaters as determined by hierarchical oligonucleotide primer extension. Appl Environ Microbiol 2008;74:2882-93. [PMID: 18344347 DOI: 10.1128/AEM.02568-07] [Cited by in Crossref: 39] [Cited by in F6Publishing: 20] [Article Influence: 2.8] [Reference Citation Analysis]
16 Munyaka PM, Khafipour E, Ghia JE. External influence of early childhood establishment of gut microbiota and subsequent health implications. Front Pediatr 2014;2:109. [PMID: 25346925 DOI: 10.3389/fped.2014.00109] [Cited by in Crossref: 113] [Cited by in F6Publishing: 101] [Article Influence: 14.1] [Reference Citation Analysis]
17 Shiozaki A, Yoneda S, Yoneda N, Yonezawa R, Matsubayashi T, Seo G, Saito S. Intestinal microbiota is different in women with preterm birth: results from terminal restriction fragment length polymorphism analysis. PLoS One 2014;9:e111374. [PMID: 25372390 DOI: 10.1371/journal.pone.0111374] [Cited by in Crossref: 44] [Cited by in F6Publishing: 35] [Article Influence: 5.5] [Reference Citation Analysis]
18 Rezzonico E, Mestdagh R, Delley M, Combremont S, Dumas ME, Holmes E, Nicholson J, Bibiloni R. Bacterial adaptation to the gut environment favors successful colonization: microbial and metabonomic characterization of a simplified microbiota mouse model. Gut Microbes 2011;2:307-18. [PMID: 22157236 DOI: 10.4161/gmic.18754] [Cited by in Crossref: 11] [Cited by in F6Publishing: 9] [Article Influence: 1.0] [Reference Citation Analysis]
19 Zhu B, Wang X, Li L. Human gut microbiome: the second genome of human body. Protein Cell 2010;1:718-25. [PMID: 21203913 DOI: 10.1007/s13238-010-0093-z] [Cited by in Crossref: 153] [Cited by in F6Publishing: 130] [Article Influence: 12.8] [Reference Citation Analysis]
20 Rawls JF, Samuel BS, Gordon JI. Gnotobiotic zebrafish reveal evolutionarily conserved responses to the gut microbiota. Proc Natl Acad Sci USA. 2004;101:4596-4601. [PMID: 15070763 DOI: 10.1073/pnas.0400706101] [Cited by in Crossref: 596] [Cited by in F6Publishing: 523] [Article Influence: 33.1] [Reference Citation Analysis]
21 Galkin F, Mamoshina P, Aliper A, Putin E, Moskalev V, Gladyshev VN, Zhavoronkov A. Human Gut Microbiome Aging Clock Based on Taxonomic Profiling and Deep Learning. iScience 2020;23:101199. [PMID: 32534441 DOI: 10.1016/j.isci.2020.101199] [Cited by in Crossref: 28] [Cited by in F6Publishing: 21] [Article Influence: 14.0] [Reference Citation Analysis]
22 Keku TO, Dulal S, Deveaux A, Jovov B, Han X. The gastrointestinal microbiota and colorectal cancer. Am J Physiol Gastrointest Liver Physiol. 2015;308:G351-G363. [PMID: 25540232 DOI: 10.1152/ajpgi.00360.2012] [Cited by in Crossref: 107] [Cited by in F6Publishing: 96] [Article Influence: 13.4] [Reference Citation Analysis]
23 Andoh A, Imaeda H, Aomatsu T, Inatomi O, Bamba S, Sasaki M, Saito Y, Tsujikawa T, Fujiyama Y. Comparison of the fecal microbiota profiles between ulcerative colitis and Crohn’s disease using terminal restriction fragment length polymorphism analysis. J Gastroenterol. 2011;46:479-486. [PMID: 21253779 DOI: 10.1007/s00535-010-0368-4] [Cited by in Crossref: 127] [Cited by in F6Publishing: 118] [Article Influence: 11.5] [Reference Citation Analysis]
24 D'Anna SE, Maniscalco M, Cappello F, Carone M, Motta A, Balbi B, Ricciardolo FLM, Caramori G, Stefano AD. Bacterial and viral infections and related inflammatory responses in chronic obstructive pulmonary disease. Ann Med 2021;53:135-50. [PMID: 32997525 DOI: 10.1080/07853890.2020.1831050] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 0.5] [Reference Citation Analysis]
25 Moragues M, Comas-Riu J, Vives-Rego J. Rapid G+ count and subpopulation assessment of the intestinal bacteria in Apodemus sylvaticus and Mus musculus by flow cytometry. Folia Microbiol (Praha) 2004;49:587-90. [PMID: 15702550 DOI: 10.1007/BF02931538] [Cited by in Crossref: 4] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
26 Bartosch S, Fite A, Macfarlane GT, McMurdo ME. Characterization of bacterial communities in feces from healthy elderly volunteers and hospitalized elderly patients by using real-time PCR and effects of antibiotic treatment on the fecal microbiota. Appl Environ Microbiol. 2004;70:3575-3581. [PMID: 15184159 DOI: 10.1128/aem.70.6.3575-3581.2004] [Cited by in Crossref: 502] [Cited by in F6Publishing: 224] [Article Influence: 27.9] [Reference Citation Analysis]
27 Ballesté E, Bonjoch X, Belanche LA, Blanch AR. Molecular indicators used in the development of predictive models for microbial source tracking. Appl Environ Microbiol 2010;76:1789-95. [PMID: 20118380 DOI: 10.1128/AEM.02350-09] [Cited by in Crossref: 59] [Cited by in F6Publishing: 12] [Article Influence: 4.9] [Reference Citation Analysis]
28 Tannock GW. The bifidobacterial and Lactobacillus microflora of humans. Clin Rev Allergy Immunol 2002;22:231-53. [PMID: 12043383 DOI: 10.1007/s12016-002-0010-1] [Cited by in Crossref: 15] [Cited by in F6Publishing: 15] [Article Influence: 0.8] [Reference Citation Analysis]
29 Wang L, Hao K, Yang T, Wang C. Role of the Lung Microbiome in the Pathogenesis of Chronic Obstructive Pulmonary Disease. Chin Med J (Engl) 2017;130:2107-11. [PMID: 28741603 DOI: 10.4103/0366-6999.211452] [Cited by in Crossref: 20] [Cited by in F6Publishing: 20] [Article Influence: 5.0] [Reference Citation Analysis]
30 Wei G, Lu H, Zhou Z, Xie H, Wang A, Nelson K, Zhao L. The microbial community in the feces of the giant panda (Ailuropoda melanoleuca) as determined by PCR-TGGE profiling and clone library analysis. Microb Ecol. 2007;54:194-202. [PMID: 17394039 DOI: 10.1007/s00248-007-9225-2] [Cited by in Crossref: 36] [Cited by in F6Publishing: 29] [Article Influence: 2.4] [Reference Citation Analysis]
31 Satokari RM, Vaughan EE, Akkermans AD, Saarela M, de Vos WM. Bifidobacterial diversity in human feces detected by genus-specific PCR and denaturing gradient gel electrophoresis. Appl Environ Microbiol. 2001;67:504-513. [PMID: 11157210 DOI: 10.1128/aem.67.2.504-513.2001] [Cited by in Crossref: 321] [Cited by in F6Publishing: 91] [Article Influence: 15.3] [Reference Citation Analysis]
32 Dicksved J, Flöistrup H, Bergström A, Rosenquist M, Pershagen G, Scheynius A, Roos S, Alm JS, Engstrand L, Braun-Fahrländer C, von Mutius E, Jansson JK. Molecular fingerprinting of the fecal microbiota of children raised according to different lifestyles. Appl Environ Microbiol 2007;73:2284-9. [PMID: 17293501 DOI: 10.1128/AEM.02223-06] [Cited by in Crossref: 90] [Cited by in F6Publishing: 41] [Article Influence: 6.0] [Reference Citation Analysis]
33 Paliy O, Kenche H, Abernathy F, Michail S. High-throughput quantitative analysis of the human intestinal microbiota with a phylogenetic microarray. Appl Environ Microbiol. 2009;75:3572-3579. [PMID: 19363078 DOI: 10.1128/aem.02764-08] [Cited by in Crossref: 68] [Cited by in F6Publishing: 37] [Article Influence: 5.2] [Reference Citation Analysis]
34 Lu J, Sanchez S, Hofacre C, Maurer JJ, Harmon BG, Lee MD. Evaluation of broiler litter with reference to the microbial composition as assessed by using 16S rRNA and functional gene markers. Appl Environ Microbiol 2003;69:901-8. [PMID: 12571010 DOI: 10.1128/AEM.69.2.901-908.2003] [Cited by in Crossref: 129] [Cited by in F6Publishing: 31] [Article Influence: 6.8] [Reference Citation Analysis]
35 Croswell A, Amir E, Teggatz P, Barman M, Salzman NH. Prolonged impact of antibiotics on intestinal microbial ecology and susceptibility to enteric Salmonella infection. Infect Immun 2009;77:2741-53. [PMID: 19380465 DOI: 10.1128/IAI.00006-09] [Cited by in Crossref: 181] [Cited by in F6Publishing: 130] [Article Influence: 13.9] [Reference Citation Analysis]
36 Kitano H, Oda K. Robustness trade-offs and host-microbial symbiosis in the immune system. Mol Syst Biol 2006;2:2006.0022. [PMID: 16738567 DOI: 10.1038/msb4100039] [Cited by in Crossref: 86] [Cited by in F6Publishing: 77] [Article Influence: 5.4] [Reference Citation Analysis]
37 Fitzgerald F, Harris K, Doyle R, Alber D, Klein N. Short communication: Evidence that microbial translocation occurs in HIV-infected children in the United Kingdom. AIDS Res Hum Retroviruses 2013;29:1589-93. [PMID: 23972017 DOI: 10.1089/AID.2013.0097] [Cited by in Crossref: 13] [Cited by in F6Publishing: 13] [Article Influence: 1.4] [Reference Citation Analysis]
38 Martín-Peláez S, Castañer O, Solà R, Motilva MJ, Castell M, Pérez-Cano FJ, Fitó M. Influence of Phenol-Enriched Olive Oils on Human Intestinal Immune Function. Nutrients 2016;8:213. [PMID: 27077879 DOI: 10.3390/nu8040213] [Cited by in Crossref: 28] [Cited by in F6Publishing: 23] [Article Influence: 4.7] [Reference Citation Analysis]
39 Dalby AB, Frank DN, St Amand AL, Bendele AM, Pace NR. Culture-independent analysis of indomethacin-induced alterations in the rat gastrointestinal microbiota. Appl Environ Microbiol. 2006;72:6707-6715. [PMID: 17021222 DOI: 10.1128/aem.00378-06] [Cited by in Crossref: 41] [Cited by in F6Publishing: 28] [Article Influence: 2.6] [Reference Citation Analysis]
40 Van der Meulen R, Makras L, Verbrugghe K, Adriany T, De Vuyst L. In vitro kinetic analysis of oligofructose consumption by Bacteroides and Bifidobacterium spp. indicates different degradation mechanisms. Appl Environ Microbiol 2006;72:1006-12. [PMID: 16461642 DOI: 10.1128/AEM.72.2.1006-1012.2006] [Cited by in Crossref: 103] [Cited by in F6Publishing: 38] [Article Influence: 6.4] [Reference Citation Analysis]
41 de Wouters T, Ledue F, Nepelska M, Doré J, Blottière HM, Lapaque N. A robust and adaptable high throughput screening method to study host-microbiota interactions in the human intestine. PLoS One 2014;9:e105598. [PMID: 25141006 DOI: 10.1371/journal.pone.0105598] [Cited by in Crossref: 9] [Cited by in F6Publishing: 7] [Article Influence: 1.1] [Reference Citation Analysis]
42 Huys G, Vanhoutte T, Vandamme P. Application of sequence-dependent electrophoresis fingerprinting in exploring biodiversity and population dynamics of human intestinal microbiota: what can be revealed? Interdiscip Perspect Infect Dis 2008;2008:597603. [PMID: 19277102 DOI: 10.1155/2008/597603] [Cited by in Crossref: 8] [Cited by in F6Publishing: 11] [Article Influence: 0.6] [Reference Citation Analysis]
43 Seksik P, Rigottier-Gois L, Gramet G, Sutren M, Pochart P, Marteau P, Jian R, Doré J. Alterations of the dominant faecal bacterial groups in patients with Crohn’s disease of the colon. Gut. 2003;52:237-242. [PMID: 12524406 DOI: 10.1136/gut.52.2.237] [Cited by in Crossref: 478] [Cited by in F6Publishing: 445] [Article Influence: 25.2] [Reference Citation Analysis]
44 Delgado S, Suárez A, Otero L, Mayo B. Variation of microbiological and biochemical parameters in the faeces of two healthy people over a 15 day period. Eur J Nutr 2004;43:375-80. [PMID: 15597174 DOI: 10.1007/s00394-004-0485-z] [Cited by in Crossref: 14] [Cited by in F6Publishing: 12] [Article Influence: 0.8] [Reference Citation Analysis]
45 Arora T, Tremaroli V. Therapeutic Potential of Butyrate for Treatment of Type 2 Diabetes. Front Endocrinol (Lausanne) 2021;12:761834. [PMID: 34737725 DOI: 10.3389/fendo.2021.761834] [Reference Citation Analysis]
46 Verhelst R, Verstraelen H, Claeys G, Verschraegen G, Delanghe J, Van Simaey L, De Ganck C, Temmerman M, Vaneechoutte M. Cloning of 16S rRNA genes amplified from normal and disturbed vaginal microflora suggests a strong association between Atopobium vaginae, Gardnerella vaginalis and bacterial vaginosis. BMC Microbiol 2004;4:16. [PMID: 15102329 DOI: 10.1186/1471-2180-4-16] [Cited by in Crossref: 230] [Cited by in F6Publishing: 213] [Article Influence: 12.8] [Reference Citation Analysis]
47 Hughes JB, Hellmann JJ, Ricketts TH, Bohannan BJ. Counting the uncountable: statistical approaches to estimating microbial diversity. Appl Environ Microbiol 2001;67:4399-406. [PMID: 11571135 DOI: 10.1128/AEM.67.10.4399-4406.2001] [Cited by in Crossref: 797] [Cited by in F6Publishing: 293] [Article Influence: 38.0] [Reference Citation Analysis]
48 Littman DR, Pamer EG. Role of the commensal microbiota in normal and pathogenic host immune responses. Cell Host Microbe. 2011;10:311-323. [PMID: 22018232 DOI: 10.1016/j.chom.2011.10.004] [Cited by in Crossref: 313] [Cited by in F6Publishing: 291] [Article Influence: 31.3] [Reference Citation Analysis]
49 Yu Z, Morrison M. Comparisons of different hypervariable regions of rrs genes for use in fingerprinting of microbial communities by PCR-denaturing gradient gel electrophoresis. Appl Environ Microbiol 2004;70:4800-6. [PMID: 15294817 DOI: 10.1128/AEM.70.8.4800-4806.2004] [Cited by in Crossref: 355] [Cited by in F6Publishing: 113] [Article Influence: 19.7] [Reference Citation Analysis]
50 Rogers GB, Carroll MP, Hoffman LR, Walker AW, Fine DA, Bruce KD. Comparing the microbiota of the cystic fibrosis lung and human gut. Gut Microbes 2010;1:85-93. [PMID: 21326915 DOI: 10.4161/gmic.1.2.11350] [Cited by in Crossref: 38] [Cited by in F6Publishing: 34] [Article Influence: 3.2] [Reference Citation Analysis]
51 Seksik P, Rigottier-Gois L, Gramet G, Sutren M, Pochart P, Marteau P, Jian R, Doré J. Alterations of the dominant faecal bacterial groups in patients with Crohn's disease of the colon. Gut. 2003;52:237-242. [PMID: 12524406 DOI: 10.1126/gut.52.2.237] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
52 Leser TD, Amenuvor JZ, Jensen TK, Lindecrona RH, Boye M, Møller K. Culture-independent analysis of gut bacteria: the pig gastrointestinal tract microbiota revisited. Appl Environ Microbiol 2002;68:673-90. [PMID: 11823207 DOI: 10.1128/AEM.68.2.673-690.2002] [Cited by in Crossref: 598] [Cited by in F6Publishing: 218] [Article Influence: 29.9] [Reference Citation Analysis]
53 Yung PY, Burke C, Lewis M, Kjelleberg S, Thomas T. Novel antibacterial proteins from the microbial communities associated with the sponge Cymbastela concentrica and the green alga Ulva australis. Appl Environ Microbiol 2011;77:1512-5. [PMID: 21183639 DOI: 10.1128/AEM.02038-10] [Cited by in Crossref: 29] [Cited by in F6Publishing: 14] [Article Influence: 2.4] [Reference Citation Analysis]
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55 Lukás F, Koppová I, Kudrna V, Kopecný J. Postnatal development of bacterial population in the gastrointestinal tract of calves. Folia Microbiol (Praha) 2007;52:99-104. [PMID: 17571805 DOI: 10.1007/BF02932147] [Cited by in Crossref: 14] [Cited by in F6Publishing: 4] [Article Influence: 0.9] [Reference Citation Analysis]
56 Warinner C, Speller C, Collins MJ, Lewis CM Jr. Ancient human microbiomes. J Hum Evol 2015;79:125-36. [PMID: 25559298 DOI: 10.1016/j.jhevol.2014.10.016] [Cited by in Crossref: 72] [Cited by in F6Publishing: 44] [Article Influence: 10.3] [Reference Citation Analysis]
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58 Lopez-Siles M, Khan TM, Duncan SH, Harmsen HJ, Garcia-Gil LJ, Flint HJ. Cultured representatives of two major phylogroups of human colonic Faecalibacterium prausnitzii can utilize pectin, uronic acids, and host-derived substrates for growth. Appl Environ Microbiol 2012;78:420-8. [PMID: 22101049 DOI: 10.1128/AEM.06858-11] [Cited by in Crossref: 218] [Cited by in F6Publishing: 109] [Article Influence: 19.8] [Reference Citation Analysis]
59 Klaassens ES, de Vos WM, Vaughan EE. Metaproteomics approach to study the functionality of the microbiota in the human infant gastrointestinal tract. Appl Environ Microbiol 2007;73:1388-92. [PMID: 17158612 DOI: 10.1128/AEM.01921-06] [Cited by in Crossref: 121] [Cited by in F6Publishing: 49] [Article Influence: 7.6] [Reference Citation Analysis]
60 Misic AM, Miedel EL, Brice AK, Cole S, Zhang GF, Dyer CD, Secreto A, Smith AL, Danet-Desnoyers G, Beiting DP. Culture-independent Profiling of the Fecal Microbiome to Identify Microbial Species Associated with a Diarrheal Outbreak in Immunocompromised Mice. Comp Med 2018;68:261-8. [PMID: 29898804 DOI: 10.30802/AALAS-CM-17-000084] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 0.3] [Reference Citation Analysis]
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