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For: Ehrlich GD, Ahmed A, Earl J, Hiller NL, Costerton JW, Stoodley P, Post JC, DeMeo P, Hu FZ. The distributed genome hypothesis as a rubric for understanding evolution in situ during chronic bacterial biofilm infectious processes. FEMS Immunol Med Microbiol. 2010;59:269-279. [PMID: 20618850 DOI: 10.1111/j.1574-695x.2010.00704.x] [Cited by in Crossref: 64] [Cited by in F6Publishing: 35] [Article Influence: 5.3] [Reference Citation Analysis]
Number Citing Articles
1 Davie JJ, Earl J, de Vries SP, Ahmed A, Hu FZ, Bootsma HJ, Stol K, Hermans PW, Wadowsky RM, Ehrlich GD, Hays JP, Campagnari AA. Comparative analysis and supragenome modeling of twelve Moraxella catarrhalis clinical isolates. BMC Genomics 2011;12:70. [PMID: 21269504 DOI: 10.1186/1471-2164-12-70] [Cited by in Crossref: 45] [Cited by in F6Publishing: 43] [Article Influence: 4.1] [Reference Citation Analysis]
2 Flannery EL, Antczak SM, Mobley HL. Self-transmissibility of the integrative and conjugative element ICEPm1 between clinical isolates requires a functional integrase, relaxase, and type IV secretion system. J Bacteriol 2011;193:4104-12. [PMID: 21665966 DOI: 10.1128/JB.05119-11] [Cited by in Crossref: 21] [Cited by in F6Publishing: 11] [Article Influence: 1.9] [Reference Citation Analysis]
3 Broadbent JR, Neeno-Eckwall EC, Stahl B, Tandee K, Cai H, Morovic W, Horvath P, Heidenreich J, Perna NT, Barrangou R, Steele JL. Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation. BMC Genomics 2012;13:533. [PMID: 23035691 DOI: 10.1186/1471-2164-13-533] [Cited by in Crossref: 101] [Cited by in F6Publishing: 83] [Article Influence: 10.1] [Reference Citation Analysis]
4 Kerschner JE, Hong W, Khampang P, Johnston N. Differential response of gel-forming mucins to pathogenic middle ear bacteria. Int J Pediatr Otorhinolaryngol 2014;78:1368-73. [PMID: 24958163 DOI: 10.1016/j.ijporl.2014.05.037] [Cited by in Crossref: 16] [Cited by in F6Publishing: 14] [Article Influence: 2.0] [Reference Citation Analysis]
5 Hu FZ, Eutsey R, Ahmed A, Frazao N, Powell E, Hiller NL, Hillman T, Buchinsky FJ, Boissy R, Janto B, Kress-Bennett J, Longwell M, Ezzo S, Post JC, Nesin M, Tomasz A, Ehrlich GD. In vivo capsular switch in Streptococcus pneumoniae--analysis by whole genome sequencing. PLoS One 2012;7:e47983. [PMID: 23144841 DOI: 10.1371/journal.pone.0047983] [Cited by in Crossref: 17] [Cited by in F6Publishing: 16] [Article Influence: 1.7] [Reference Citation Analysis]
6 Kress-Bennett JM, Hiller NL, Eutsey RA, Powell E, Longwell MJ, Hillman T, Blackwell T, Byers B, Mell JC, Post JC, Hu FZ, Ehrlich GD, Janto BA. Identification and Characterization of msf, a Novel Virulence Factor in Haemophilus influenzae. PLoS One 2016;11:e0149891. [PMID: 26977929 DOI: 10.1371/journal.pone.0149891] [Cited by in Crossref: 11] [Cited by in F6Publishing: 9] [Article Influence: 1.8] [Reference Citation Analysis]
7 Boissy R, Ahmed A, Janto B, Earl J, Hall BG, Hogg JS, Pusch GD, Hiller LN, Powell E, Hayes J, Yu S, Kathju S, Stoodley P, Post JC, Ehrlich GD, Hu FZ. Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae Using a modification of the finite supragenome model. BMC Genomics 2011;12. [DOI: 10.1186/1471-2164-12-187] [Cited by in Crossref: 42] [Cited by in F6Publishing: 39] [Article Influence: 3.8] [Reference Citation Analysis]
8 Domenech M, García E, Moscoso M. Biofilm formation in Streptococcus pneumoniae. Microb Biotechnol 2012;5:455-65. [PMID: 21906265 DOI: 10.1111/j.1751-7915.2011.00294.x] [Cited by in Crossref: 47] [Cited by in F6Publishing: 43] [Article Influence: 4.3] [Reference Citation Analysis]
9 Khosravi Y, Ling LC, Loke MF, Shailendra S, Prepageran N, Vadivelu J. Determination of the biofilm formation capacity of bacterial pathogens associated with otorhinolaryngologic diseases in the Malaysian population. Eur Arch Otorhinolaryngol 2014;271:1227-33. [PMID: 23880921 DOI: 10.1007/s00405-013-2637-3] [Cited by in Crossref: 7] [Cited by in F6Publishing: 5] [Article Influence: 0.8] [Reference Citation Analysis]
10 Eutsey RA, Hiller NL, Earl JP, Janto BA, Dahlgren ME, Ahmed A, Powell E, Schultz MP, Gilsdorf JR, Zhang L, Smith A, Murphy TF, Sethi S, Shen K, Post JC, Hu FZ, Ehrlich GD. Design and validation of a supragenome array for determination of the genomic content of Haemophilus influenzae isolates. BMC Genomics 2013;14:484. [PMID: 23865594 DOI: 10.1186/1471-2164-14-484] [Cited by in Crossref: 13] [Cited by in F6Publishing: 12] [Article Influence: 1.4] [Reference Citation Analysis]
11 Papke RT, Corral P, Ram-Mohan N, de la Haba RR, Sánchez-Porro C, Makkay A, Ventosa A. Horizontal gene transfer, dispersal and haloarchaeal speciation. Life (Basel) 2015;5:1405-26. [PMID: 25997110 DOI: 10.3390/life5021405] [Cited by in Crossref: 13] [Cited by in F6Publishing: 13] [Article Influence: 1.9] [Reference Citation Analysis]
12 Hu FZ, Król JE, Tsai CHS, Eutsey RA, Hiller LN, Sen B, Ahmed A, Hillman T, Buchinsky FJ, Nistico L, Dice B, Longwell M, Horsey E, Ehrlich GD. Deletion of genes involved in the ketogluconate metabolism, Entner-Doudoroff pathway, and glucose dehydrogenase increase local and invasive virulence phenotypes in Streptococcus pneumoniae. PLoS One 2019;14:e0209688. [PMID: 30620734 DOI: 10.1371/journal.pone.0209688] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
13 Ahmed A, Earl J, Retchless A, Hillier SL, Rabe LK, Cherpes TL, Powell E, Janto B, Eutsey R, Hiller NL, Boissy R, Dahlgren ME, Hall BG, Costerton JW, Post JC, Hu FZ, Ehrlich GD. Comparative genomic analyses of 17 clinical isolates of Gardnerella vaginalis provide evidence of multiple genetically isolated clades consistent with subspeciation into genovars. J Bacteriol 2012;194:3922-37. [PMID: 22609915 DOI: 10.1128/JB.00056-12] [Cited by in Crossref: 115] [Cited by in F6Publishing: 71] [Article Influence: 11.5] [Reference Citation Analysis]
14 Flannery EL, Wang L, Zöllner S, Foxman B, Mobley HL, Mody L. Wounds, functional disability, and indwelling devices are associated with cocolonization by methicillin-resistant Staphylococcus aureus and vancomycin-resistant enterococci in southeast Michigan. Clin Infect Dis 2011;53:1215-22. [PMID: 22080118 DOI: 10.1093/cid/cir733] [Cited by in Crossref: 11] [Cited by in F6Publishing: 10] [Article Influence: 1.1] [Reference Citation Analysis]
15 Cellini L. Helicobacter pylori: A chameleon-like approach to life. World J Gastroenterol 2014; 20(19): 5575-5582 [PMID: 24914317 DOI: 10.3748/wjg.v20.i19.5575] [Cited by in CrossRef: 27] [Cited by in F6Publishing: 24] [Article Influence: 3.4] [Reference Citation Analysis]
16 Ereshefsky M, Pedroso M. Rethinking evolutionary individuality. Proc Natl Acad Sci U S A 2015;112:10126-32. [PMID: 26039982 DOI: 10.1073/pnas.1421377112] [Cited by in Crossref: 40] [Cited by in F6Publishing: 26] [Article Influence: 5.7] [Reference Citation Analysis]
17 Wüthrich D, Berthoud H, Wechsler D, Eugster E, Irmler S, Bruggmann R. The Histidine Decarboxylase Gene Cluster of Lactobacillus parabuchneri Was Gained by Horizontal Gene Transfer and Is Mobile within the Species. Front Microbiol 2017;8:218. [PMID: 28261177 DOI: 10.3389/fmicb.2017.00218] [Cited by in Crossref: 14] [Cited by in F6Publishing: 11] [Article Influence: 2.8] [Reference Citation Analysis]
18 Hall DC Jr, Król JE, Cahill JP, Ji HF, Ehrlich GD. The Development of a Pipeline for the Identification and Validation of Small-Molecule RelA Inhibitors for Use as Anti-Biofilm Drugs. Microorganisms 2020;8:E1310. [PMID: 32872142 DOI: 10.3390/microorganisms8091310] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
19 Wang X, Wood TK. IS5 inserts upstream of the master motility operon flhDC in a quasi-Lamarckian way. ISME J 2011;5:1517-25. [PMID: 21390082 DOI: 10.1038/ismej.2011.27] [Cited by in Crossref: 33] [Cited by in F6Publishing: 28] [Article Influence: 3.0] [Reference Citation Analysis]
20 Hiller NL, Ahmed A, Powell E, Martin DP, Eutsey R, Earl J, Janto B, Boissy RJ, Hogg J, Barbadora K, Sampath R, Lonergan S, Post JC, Hu FZ, Ehrlich GD. Generation of genic diversity among Streptococcus pneumoniae strains via horizontal gene transfer during a chronic polyclonal pediatric infection. PLoS Pathog 2010;6:e1001108. [PMID: 20862314 DOI: 10.1371/journal.ppat.1001108] [Cited by in Crossref: 99] [Cited by in F6Publishing: 101] [Article Influence: 8.3] [Reference Citation Analysis]
21 Ram Mohan N, Fullmer MS, Makkay AM, Wheeler R, Ventosa A, Naor A, Gogarten JP, Papke RT. Evidence from phylogenetic and genome fingerprinting analyses suggests rapidly changing variation in Halorubrum and Haloarcula populations. Front Microbiol 2014;5:143. [PMID: 24782838 DOI: 10.3389/fmicb.2014.00143] [Cited by in Crossref: 16] [Cited by in F6Publishing: 14] [Article Influence: 2.0] [Reference Citation Analysis]
22 Kim MK, Drescher K, Pak OS, Bassler BL, Stone HA. Filaments in curved streamlines: Rapid formation of Staphylococcus aureus biofilm streamers. New J Phys 2014;16:065024. [PMID: 25484614 DOI: 10.1088/1367-2630/16/6/065024] [Cited by in Crossref: 29] [Cited by in F6Publishing: 32] [Article Influence: 3.6] [Reference Citation Analysis]
23 Cope EK, Goldstein-Daruech N, Kofonow JM, Christensen L, McDermott B, Monroy F, Palmer JN, Chiu AG, Shirtliff ME, Cohen NA, Leid JG. Regulation of virulence gene expression resulting from Streptococcus pneumoniae and nontypeable Haemophilus influenzae interactions in chronic disease. PLoS One 2011;6:e28523. [PMID: 22162775 DOI: 10.1371/journal.pone.0028523] [Cited by in Crossref: 29] [Cited by in F6Publishing: 31] [Article Influence: 2.6] [Reference Citation Analysis]
24 Palmer MP, Melton-Kreft R, Nistico L, Hiller NL, Kim LH, Altman GT, Altman DT, Sotereanos NG, Hu FZ, De Meo PJ, Ehrlich GD. Polymerase Chain Reaction-Electrospray-Time-of-Flight Mass Spectrometry Versus Culture for Bacterial Detection in Septic Arthritis and Osteoarthritis. Genet Test Mol Biomarkers 2016;20:721-31. [PMID: 27749085 DOI: 10.1089/gtmb.2016.0080] [Cited by in Crossref: 12] [Cited by in F6Publishing: 8] [Article Influence: 2.0] [Reference Citation Analysis]
25 Horvath P, Aulner N, Bickle M, Davies AM, Nery ED, Ebner D, Montoya MC, Östling P, Pietiäinen V, Price LS, Shorte SL, Turcatti G, von Schantz C, Carragher NO. Screening out irrelevant cell-based models of disease. Nat Rev Drug Discov 2016;15:751-69. [PMID: 27616293 DOI: 10.1038/nrd.2016.175] [Cited by in Crossref: 266] [Cited by in F6Publishing: 233] [Article Influence: 44.3] [Reference Citation Analysis]
26 Percival SL, Suleman L. Biofilms and Helicobacter pylori: Dissemination and persistence within the environment and host. World J Gastrointest Pathophysiol 2014; 5(3): 122-132 [PMID: 25133015 DOI: 10.4291/wjgp.v5.i3.122] [Cited by in CrossRef: 27] [Cited by in F6Publishing: 29] [Article Influence: 3.4] [Reference Citation Analysis]
27 Lees JA, Kremer PHC, Manso AS, Croucher NJ, Ferwerda B, Serón MV, Oggioni MR, Parkhill J, Brouwer MC, van der Ende A, van de Beek D, Bentley SD. Large scale genomic analysis shows no evidence for pathogen adaptation between the blood and cerebrospinal fluid niches during bacterial meningitis. Microb Genom 2017;3:e000103. [PMID: 28348877 DOI: 10.1099/mgen.0.000103] [Cited by in Crossref: 16] [Cited by in F6Publishing: 21] [Article Influence: 3.2] [Reference Citation Analysis]
28 Boon E, Meehan CJ, Whidden C, Wong DH, Langille MG, Beiko RG. Interactions in the microbiome: communities of organisms and communities of genes. FEMS Microbiol Rev 2014;38:90-118. [PMID: 23909933 DOI: 10.1111/1574-6976.12035] [Cited by in Crossref: 127] [Cited by in F6Publishing: 101] [Article Influence: 14.1] [Reference Citation Analysis]
29 Palmer MP, Altman DT, Altman GT, Sewecke JJ, Saltarski C, Nistico L, Melton-Kreft R, Hu FZ, Ehrlich GD. Bacterial Identification and Visualization of Bacterial Biofilms Adjacent to Fracture Sites After Internal Fixation. Genet Test Mol Biomarkers 2022;26:70-80. [PMID: 35225678 DOI: 10.1089/gtmb.2019.0225] [Reference Citation Analysis]
30 Lowenberg DW. A Technotheoretical Approach to the Management of Osteomyelitis. Techniques in Orthopaedics 2015;30:209-14. [DOI: 10.1097/bto.0000000000000150] [Cited by in Crossref: 1] [Article Influence: 0.1] [Reference Citation Analysis]
31 Tuttle MS, Mostow E, Mukherjee P, Hu FZ, Melton-Kreft R, Ehrlich GD, Dowd SE, Ghannoum MA. Characterization of bacterial communities in venous insufficiency wounds by use of conventional culture and molecular diagnostic methods. J Clin Microbiol 2011;49:3812-9. [PMID: 21880958 DOI: 10.1128/JCM.00847-11] [Cited by in Crossref: 46] [Cited by in F6Publishing: 21] [Article Influence: 4.2] [Reference Citation Analysis]
32 Nathan C. Fresh approaches to anti-infective therapies. Sci Transl Med 2012;4:140sr2. [PMID: 22745440 DOI: 10.1126/scitranslmed.3003081] [Cited by in Crossref: 115] [Cited by in F6Publishing: 105] [Article Influence: 11.5] [Reference Citation Analysis]
33 Tribble GD, Rigney TW, Dao DH, Wong CT, Kerr JE, Taylor BE, Pacha S, Kaplan HB. Natural competence is a major mechanism for horizontal DNA transfer in the oral pathogen Porphyromonas gingivalis. mBio 2012;3:e00231-11. [PMID: 22294679 DOI: 10.1128/mBio.00231-11] [Cited by in Crossref: 45] [Cited by in F6Publishing: 26] [Article Influence: 4.5] [Reference Citation Analysis]
34 Janto BA, Hiller NL, Eutsey RA, Dahlgren ME, Earl JP, Powell E, Ahmed A, Hu FZ, Ehrlich GD. Development and validation of an Haemophilus influenzae supragenome hybridization (SGH) array for transcriptomic analyses. PLoS One 2014;9:e105493. [PMID: 25290153 DOI: 10.1371/journal.pone.0105493] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.4] [Reference Citation Analysis]
35 Phillips PL, Schultz GS. Molecular Mechanisms of Biofilm Infection: Biofilm Virulence Factors. Adv Wound Care (New Rochelle) 2012;1:109-14. [PMID: 24527289 DOI: 10.1089/wound.2011.0301] [Cited by in Crossref: 36] [Cited by in F6Publishing: 31] [Article Influence: 3.6] [Reference Citation Analysis]
36 Wood TK, Hong SH, Ma Q. Engineering biofilm formation and dispersal. Trends Biotechnol 2011;29:87-94. [PMID: 21131080 DOI: 10.1016/j.tibtech.2010.11.001] [Cited by in Crossref: 87] [Cited by in F6Publishing: 74] [Article Influence: 7.3] [Reference Citation Analysis]
37 Rudkjøbing VB, Thomsen TR, Xu Y, Melton-Kreft R, Ahmed A, Eickhardt S, Bjarnsholt T, Poulsen SS, Nielsen PH, Earl JP, Ehrlich GD, Moser C. Comparing culture and molecular methods for the identification of microorganisms involved in necrotizing soft tissue infections. BMC Infect Dis 2016;16:652. [PMID: 27821087 DOI: 10.1186/s12879-016-1976-2] [Cited by in Crossref: 20] [Cited by in F6Publishing: 18] [Article Influence: 3.3] [Reference Citation Analysis]
38 Cai Z, Mo Z, Zheng S, Lan S, Xie S, Lu J, Tang C, Shen Z. Flavaspidic acid BB combined with mupirocin improves its anti-bacterial and anti-biofilm activities against Staphylococcus epidermidis. BMC Microbiol 2022;22:179. [PMID: 35840879 DOI: 10.1186/s12866-022-02578-y] [Reference Citation Analysis]