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For: Andrews RJ, O'Leary CA, Tompkins VS, Peterson JM, Haniff HS, Williams C, Disney MD, Moss WN. A map of the SARS-CoV-2 RNA structurome. NAR Genom Bioinform 2021;3:lqab043. [PMID: 34046592 DOI: 10.1093/nargab/lqab043] [Cited by in Crossref: 5] [Cited by in F6Publishing: 16] [Article Influence: 5.0] [Reference Citation Analysis]
Number Citing Articles
1 Rojas-cruz AF, Gallego-gómez JC, Bermúdez-santana CI. RNA structure-altering mutations underlying positive selection on Spike protein reveal novel putative signatures to trace crossing host-species barriers in Betacoronavirus. RNA Biology 2022;19:1019-44. [DOI: 10.1080/15476286.2022.2115750] [Reference Citation Analysis]
2 Gumna J, Antczak M, Adamiak RW, Bujnicki JM, Chen S, Ding F, Ghosh P, Li J, Mukherjee S, Nithin C, Pachulska-wieczorek K, Ponce-salvatierra A, Popenda M, Sarzynska J, Wirecki T, Zhang D, Zhang S, Zok T, Westhof E, Miao Z, Szachniuk M, Rybarczyk A. Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models. IJMS 2022;23:9630. [DOI: 10.3390/ijms23179630] [Reference Citation Analysis]
3 Yan S, Zhu Q, Jain S, Schlick T. Length-dependent motions of SARS-CoV-2 frameshifting RNA pseudoknot and alternative conformations suggest avenues for frameshifting suppression. Nat Commun 2022;13:4284. [PMID: 35879278 DOI: 10.1038/s41467-022-31353-w] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
4 Bassett M, Salemi M, Rife Magalis B. Lessons Learned and Yet-to-Be Learned on the Importance of RNA Structure in SARS-CoV-2 Replication. Microbiol Mol Biol Rev. [DOI: 10.1128/mmbr.00057-21] [Reference Citation Analysis]
5 Cadena-caballero CE, Vera-cala LM, Barrios-hernandez C, Rueda-plata D, Forero-buitrago LJ, Torres-jimenez CS, Lizarazo-gutierrez E, Agudelo-rodriguez M, Martinez-perez F. Denaturing and dNTPs reagents improve SARS-CoV-2 detection via single and multiplex RT-qPCR. F1000Res 2022;11:331. [DOI: 10.12688/f1000research.109673.1] [Reference Citation Analysis]
6 Tompkins VS, Rouse WB, O'Leary CA, Andrews RJ, Moss WN. Analyses of human cancer driver genes uncovers evolutionarily conserved RNA structural elements involved in posttranscriptional control. PLoS One 2022;17:e0264025. [PMID: 35213597 DOI: 10.1371/journal.pone.0264025] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
7 Lan TCT, Allan MF, Malsick LE, Woo JZ, Zhu C, Zhang F, Khandwala S, Nyeo SSY, Sun Y, Guo JU, Bathe M, Näär A, Griffiths A, Rouskin S. Secondary structural ensembles of the SARS-CoV-2 RNA genome in infected cells. Nat Commun 2022;13:1128. [PMID: 35236847 DOI: 10.1038/s41467-022-28603-2] [Cited by in Crossref: 13] [Cited by in F6Publishing: 11] [Article Influence: 13.0] [Reference Citation Analysis]
8 Soszynska-jozwiak M, Ruszkowska A, Kierzek R, O’leary CA, Moss WN, Kierzek E. Secondary Structure of Subgenomic RNA M of SARS-CoV-2. Viruses 2022;14:322. [DOI: 10.3390/v14020322] [Reference Citation Analysis]
9 Rouse WB, Andrews RJ, Booher NJ, Wang J, Woodman ME, Dow ER, Jessop TC, Moss WN. Prediction and analysis of functional RNA structures within the integrative genomics viewer. NAR Genom Bioinform 2022;4:lqab127. [PMID: 35047817 DOI: 10.1093/nargab/lqab127] [Cited by in F6Publishing: 2] [Reference Citation Analysis]
10 Peterson JM, O'Leary CA, Moss WN. In silico analysis of local RNA secondary structure in influenza virus A, B and C finds evidence of widespread ordered stability but little evidence of significant covariation. Sci Rep 2022;12:310. [PMID: 35013354 DOI: 10.1038/s41598-021-03767-x] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
11 Pawlica P, Yario TA, White S, Wang J, Moss WN, Hui P, Vinetz JM, Steitz JA. SARS-CoV-2 expresses a microRNA-like small RNA able to selectively repress host genes. Proc Natl Acad Sci U S A 2021;118:e2116668118. [PMID: 34903581 DOI: 10.1073/pnas.2116668118] [Cited by in F6Publishing: 10] [Reference Citation Analysis]
12 Ambike S, Cheng CC, Feuerherd M, Velkov S, Baldassi D, Afridi SQ, Porras-Gonzalez D, Wei X, Hagen P, Kneidinger N, Stoleriu MG, Grass V, Burgstaller G, Pichlmair A, Merkel OM, Ko C, Michler T. Targeting genomic SARS-CoV-2 RNA with siRNAs allows efficient inhibition of viral replication and spread. Nucleic Acids Res 2021:gkab1248. [PMID: 34928377 DOI: 10.1093/nar/gkab1248] [Cited by in F6Publishing: 7] [Reference Citation Analysis]
13 Richter C, Hohmann KF, Toews S, Mathieu D, Altincekic N, Bains JK, Binas O, Ceylan B, Duchardt-Ferner E, Ferner J, Fürtig B, Grün JT, Hengesbach M, Hymon D, Jonker HRA, Knezic B, Korn SM, Landgraf T, Löhr F, Peter SA, Pyper DJ, Qureshi NS, Schlundt A, Schnieders R, Stirnal E, Sudakov A, Vögele J, Weigand JE, Wirmer-Bartoschek J, Witt K, Wöhnert J, Schwalbe H, Wacker A. 1H, 13C and 15N assignment of stem-loop SL1 from the 5'-UTR of SARS-CoV-2. Biomol NMR Assign 2021;15:467-74. [PMID: 34453696 DOI: 10.1007/s12104-021-10047-2] [Reference Citation Analysis]
14 Yang SL, DeFalco L, Anderson DE, Zhang Y, Aw JGA, Lim SY, Lim XN, Tan KY, Zhang T, Chawla T, Su Y, Lezhava A, Merits A, Wang LF, Huber RG, Wan Y. Comprehensive mapping of SARS-CoV-2 interactions in vivo reveals functional virus-host interactions. Nat Commun 2021;12:5113. [PMID: 34433821 DOI: 10.1038/s41467-021-25357-1] [Cited by in Crossref: 2] [Cited by in F6Publishing: 13] [Article Influence: 2.0] [Reference Citation Analysis]
15 Schlick T, Zhu Q, Dey A, Jain S, Yan S, Laederach A. To Knot or Not to Knot: Multiple Conformations of the SARS-CoV-2 Frameshifting RNA Element. J Am Chem Soc 2021;143:11404-22. [PMID: 34283611 DOI: 10.1021/jacs.1c03003] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
16 Wacker A, Weigand JE, Akabayov SR, Altincekic N, Bains JK, Banijamali E, Binas O, Castillo-Martinez J, Cetiner E, Ceylan B, Chiu LY, Davila-Calderon J, Dhamotharan K, Duchardt-Ferner E, Ferner J, Frydman L, Fürtig B, Gallego J, Grün JT, Hacker C, Haddad C, Hähnke M, Hengesbach M, Hiller F, Hohmann KF, Hymon D, de Jesus V, Jonker H, Keller H, Knezic B, Landgraf T, Löhr F, Luo L, Mertinkus KR, Muhs C, Novakovic M, Oxenfarth A, Palomino-Schätzlein M, Petzold K, Peter SA, Pyper DJ, Qureshi NS, Riad M, Richter C, Saxena K, Schamber T, Scherf T, Schlagnitweit J, Schlundt A, Schnieders R, Schwalbe H, Simba-Lahuasi A, Sreeramulu S, Stirnal E, Sudakov A, Tants JN, Tolbert BS, Vögele J, Weiß L, Wirmer-Bartoschek J, Wirtz Martin MA, Wöhnert J, Zetzsche H. Secondary structure determination of conserved SARS-CoV-2 RNA elements by NMR spectroscopy. Nucleic Acids Res 2020;48:12415-35. [PMID: 33167030 DOI: 10.1093/nar/gkaa1013] [Cited by in Crossref: 39] [Cited by in F6Publishing: 51] [Article Influence: 19.5] [Reference Citation Analysis]