BPG is committed to discovery and dissemination of knowledge
Cited by in F6Publishing
For: Polychronopoulos D, King JWD, Nash AJ, Tan G, Lenhard B. Conserved non-coding elements: developmental gene regulation meets genome organization. Nucleic Acids Res 2017;45:12611-24. [PMID: 29121339 DOI: 10.1093/nar/gkx1074] [Cited by in Crossref: 49] [Cited by in F6Publishing: 41] [Article Influence: 12.3] [Reference Citation Analysis]
Number Citing Articles
1 [DOI: 10.1101/2020.07.11.192575] [Cited by in Crossref: 6] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
2 Rivera-Rivera CJ, Montoya-Burgos JI. LSX: automated reduction of gene-specific lineage evolutionary rate heterogeneity for multi-gene phylogeny inference. BMC Bioinformatics 2019;20:420. [PMID: 31409290 DOI: 10.1186/s12859-019-3020-1] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 0.7] [Reference Citation Analysis]
3 Bagadia M, Chandradoss KR, Jain Y, Singh H, Lal M, Sandhu KS. Evolutionary Loss of Genomic Proximity to Conserved Noncoding Elements Impacted the Gene Expression Dynamics During Mammalian Brain Development. Genetics 2019;211:1239-54. [PMID: 30796012 DOI: 10.1534/genetics.119.301973] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.7] [Reference Citation Analysis]
4 Shatskikh AS, Kotov AA, Adashev VE, Bazylev SS, Olenina LV. Functional Significance of Satellite DNAs: Insights From Drosophila. Front Cell Dev Biol 2020;8:312. [PMID: 32432114 DOI: 10.3389/fcell.2020.00312] [Cited by in Crossref: 8] [Cited by in F6Publishing: 6] [Article Influence: 4.0] [Reference Citation Analysis]
5 Lucena-Perez M, Kleinman-Ruiz D, Marmesat E, Saveljev AP, Schmidt K, Godoy JA. Bottleneck-associated changes in the genomic landscape of genetic diversity in wild lynx populations. Evol Appl 2021;14:2664-79. [PMID: 34815746 DOI: 10.1111/eva.13302] [Reference Citation Analysis]
6 Beck EA, Healey HM, Small CM, Currey MC, Desvignes T, Cresko WA, Postlethwait JH. Advancing human disease research with fish evolutionary mutant models. Trends Genet 2021:S0168-9525(21)00191-8. [PMID: 34334238 DOI: 10.1016/j.tig.2021.07.002] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
7 Figiel DM, Elsayed R, Nelson AC. Investigating the molecular guts of endoderm formation using zebrafish. Brief Funct Genomics 2021:elab013. [PMID: 33754635 DOI: 10.1093/bfgp/elab013] [Reference Citation Analysis]
8 Li X, Shi L, Wang Y, Zhong J, Zhao X, Teng H, Shi X, Yang H, Ruan S, Li M, Sun ZS, Zhan Q, Mao F. OncoBase: a platform for decoding regulatory somatic mutations in human cancers. Nucleic Acids Res 2019;47:D1044-55. [PMID: 30445567 DOI: 10.1093/nar/gky1139] [Cited by in Crossref: 11] [Cited by in F6Publishing: 11] [Article Influence: 5.5] [Reference Citation Analysis]
9 Diament A, Tuller T. Modeling three-dimensional genomic organization in evolution and pathogenesis. Semin Cell Dev Biol 2019;90:78-93. [PMID: 30030143 DOI: 10.1016/j.semcdb.2018.07.008] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 1.5] [Reference Citation Analysis]
10 De AK, Muthiyan R, Ponraj P, Muniswamy K, Sunder J, Kundu A, Karunakaran D, George Z, Kundu M, Ahmed SZ, Malakar D, Bhattacharya D. Mitogenome analysis of Indian isolate of Rhipicephalus microplus clade A sensu ( ): A first report from Maritime South-East Asia. Mitochondrion 2019;49:135-48. [DOI: 10.1016/j.mito.2019.07.014] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
11 Tan G, Polychronopoulos D, Lenhard B. CNEr: A toolkit for exploring extreme noncoding conservation. PLoS Comput Biol 2019;15:e1006940. [PMID: 31449516 DOI: 10.1371/journal.pcbi.1006940] [Cited by in Crossref: 7] [Cited by in F6Publishing: 5] [Article Influence: 2.3] [Reference Citation Analysis]
12 Clément Y, Torbey P, Gilardi-Hebenstreit P, Crollius HR. Enhancer-gene maps in the human and zebrafish genomes using evolutionary linkage conservation. Nucleic Acids Res 2020;48:2357-71. [PMID: 31943068 DOI: 10.1093/nar/gkz1199] [Cited by in Crossref: 13] [Cited by in F6Publishing: 9] [Article Influence: 6.5] [Reference Citation Analysis]
13 Zhang YM, Williams JL, Lucky A, Brian W. Understanding UCEs: A Comprehensive Primer on Using Ultraconserved Elements for Arthropod Phylogenomics. Insect Systematics and Diversity 2019;3:3. [DOI: 10.1093/isd/ixz016] [Cited by in Crossref: 15] [Cited by in F6Publishing: 7] [Article Influence: 5.0] [Reference Citation Analysis]
14 Parker HJ, De Kumar B, Pushel I, Bronner ME, Krumlauf R. Analysis of lamprey meis genes reveals that conserved inputs from Hox, Meis and Pbx proteins control their expression in the hindbrain and neural tube. Dev Biol 2021;479:61-76. [PMID: 34310923 DOI: 10.1016/j.ydbio.2021.07.014] [Reference Citation Analysis]
15 Lidgard S, Love AC. Rethinking Living Fossils. Bioscience 2018;68:760-70. [PMID: 30385890 DOI: 10.1093/biosci/biy084] [Cited by in Crossref: 13] [Cited by in F6Publishing: 4] [Article Influence: 3.3] [Reference Citation Analysis]
16 [DOI: 10.1101/829887] [Cited by in Crossref: 11] [Cited by in F6Publishing: 2] [Reference Citation Analysis]
17 Joshi M, Kapopoulou A, Laurent S. Impact of Genetic Variation in Gene Regulatory Sequences: A Population Genomics Perspective. Front Genet 2021;12:660899. [PMID: 34276769 DOI: 10.3389/fgene.2021.660899] [Reference Citation Analysis]
18 Mugal CF, Wang M, Backström N, Wheatcroft D, Ålund M, Sémon M, McFarlane SE, Dutoit L, Qvarnström A, Ellegren H. Tissue-specific patterns of regulatory changes underlying gene expression differences among Ficedula flycatchers and their naturally occurring F1 hybrids. Genome Res 2020;30:1727-39. [PMID: 33144405 DOI: 10.1101/gr.254508.119] [Cited by in Crossref: 3] [Article Influence: 1.5] [Reference Citation Analysis]
19 Casanova EL, Switala AE, Dandamudi S, Hickman AR, Vandenbrink J, Sharp JL, Feltus FA, Casanova MF. Autism risk genes are evolutionarily ancient and maintain a unique feature landscape that echoes their function. Autism Res 2019;12:860-9. [PMID: 31025836 DOI: 10.1002/aur.2112] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
20 Papageorgiou S. Abnormal Elongations of HOX Gene Clusters May Cause Cancer. Front Cell Dev Biol 2018;6:25. [PMID: 29662879 DOI: 10.3389/fcell.2018.00025] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
21 Krefting J, Andrade-Navarro MA, Ibn-Salem J. Evolutionary stability of topologically associating domains is associated with conserved gene regulation. BMC Biol 2018;16:87. [PMID: 30086749 DOI: 10.1186/s12915-018-0556-x] [Cited by in Crossref: 59] [Cited by in F6Publishing: 43] [Article Influence: 14.8] [Reference Citation Analysis]
22 Song B, Buckler ES, Wang H, Wu Y, Rees E, Kellogg EA, Gates DJ, Khaipho-Burch M, Bradbury PJ, Ross-Ibarra J, Hufford MB, Romay MC. Conserved noncoding sequences provide insights into regulatory sequence and loss of gene expression in maize. Genome Res 2021. [PMID: 34045362 DOI: 10.1101/gr.266528.120] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
23 Blümel R, Zink M, Klopocki E, Liedtke D. On the traces of tcf12: Investigation of the gene expression pattern during development and cranial suture patterning in zebrafish (Danio rerio). PLoS One 2019;14:e0218286. [PMID: 31188878 DOI: 10.1371/journal.pone.0218286] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 1.7] [Reference Citation Analysis]
24 Ayad LAK, Pissis SP, Polychronopoulos D. CNEFinder: finding conserved non-coding elements in genomes. Bioinformatics 2018;34:i743-7. [PMID: 30423090 DOI: 10.1093/bioinformatics/bty601] [Cited by in Crossref: 5] [Cited by in F6Publishing: 1] [Article Influence: 1.7] [Reference Citation Analysis]
25 Aich M, Chakraborty D. Role of lncRNAs in stem cell maintenance and differentiation. Curr Top Dev Biol 2020;138:73-112. [PMID: 32220299 DOI: 10.1016/bs.ctdb.2019.11.003] [Cited by in Crossref: 3] [Cited by in F6Publishing: 4] [Article Influence: 1.0] [Reference Citation Analysis]
26 Papageorgiou S. Physical Laws Shape Up HOX Gene Collinearity. J Dev Biol 2021;9:17. [PMID: 34066586 DOI: 10.3390/jdb9020017] [Reference Citation Analysis]
27 Apostolou-Karampelis K, Polychronopoulos D, Almirantis Y. Introduction of 'Generalized Genomic Signatures' for the quantification of neighbour preferences leads to taxonomy- and functionality-based distinction among sequences. Sci Rep 2019;9:1700. [PMID: 30737442 DOI: 10.1038/s41598-018-38157-3] [Reference Citation Analysis]
28 Fritz AJ, Gillis NE, Gerrard DL, Rodriguez PD, Hong D, Rose JT, Ghule PN, Bolf EL, Gordon JA, Tye CE, Boyd JR, Tracy KM, Nickerson JA, van Wijnen AJ, Imbalzano AN, Heath JL, Frietze SE, Zaidi SK, Carr FE, Lian JB, Stein JL, Stein GS. Higher order genomic organization and epigenetic control maintain cellular identity and prevent breast cancer. Genes Chromosomes Cancer 2019;58:484-99. [PMID: 30873710 DOI: 10.1002/gcc.22731] [Cited by in Crossref: 6] [Cited by in F6Publishing: 7] [Article Influence: 2.0] [Reference Citation Analysis]
29 Rubin BER, Jones BM, Hunt BG, Kocher SD. Rate variation in the evolution of non-coding DNA associated with social evolution in bees. Philos Trans R Soc Lond B Biol Sci 2019;374:20180247. [PMID: 31154980 DOI: 10.1098/rstb.2018.0247] [Cited by in Crossref: 10] [Cited by in F6Publishing: 8] [Article Influence: 3.3] [Reference Citation Analysis]
30 Hedin M, Derkarabetian S, Alfaro A, Ramírez MJ, Bond JE. Phylogenomic analysis and revised classification of atypoid mygalomorph spiders (Araneae, Mygalomorphae), with notes on arachnid ultraconserved element loci. PeerJ 2019;7:e6864. [PMID: 31110925 DOI: 10.7717/peerj.6864] [Cited by in Crossref: 28] [Cited by in F6Publishing: 16] [Article Influence: 9.3] [Reference Citation Analysis]
31 Pawlak M, Kedzierska KZ, Migdal M, Nahia KA, Ramilowski JA, Bugajski L, Hashimoto K, Marconi A, Piwocka K, Carninci P, Winata CL. Dynamics of cardiomyocyte transcriptome and chromatin landscape demarcates key events of heart development. Genome Res 2019;29:506-19. [PMID: 30760547 DOI: 10.1101/gr.244491.118] [Cited by in Crossref: 11] [Cited by in F6Publishing: 8] [Article Influence: 3.7] [Reference Citation Analysis]
32 Osipova E, Hecker N, Hiller M. RepeatFiller newly identifies megabases of aligning repetitive sequences and improves annotations of conserved non-exonic elements. Gigascience 2019;8:giz132. [PMID: 31742600 DOI: 10.1093/gigascience/giz132] [Cited by in Crossref: 6] [Cited by in F6Publishing: 4] [Article Influence: 3.0] [Reference Citation Analysis]
33 Groß C, Bortoluzzi C, de Ridder D, Megens HJ, Groenen MAM, Reinders M, Bosse M. Prioritizing sequence variants in conserved non-coding elements in the chicken genome using chCADD. PLoS Genet 2020;16:e1009027. [PMID: 32966296 DOI: 10.1371/journal.pgen.1009027] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
34 Leypold NA, Speicher MR. Evolutionary conservation in noncoding genomic regions. Trends Genet 2021:S0168-9525(21)00148-7. [PMID: 34238591 DOI: 10.1016/j.tig.2021.06.007] [Reference Citation Analysis]
35 Birkhoff JC, Brouwer RWW, Kolovos P, Korporaal AL, Bermejo-Santos A, Boltsis I, Nowosad K, van den Hout MCGN, Grosveld FG, van IJcken WFJ, Huylebroeck D, Conidi A. Targeted chromatin conformation analysis identifies novel distal neural enhancers of ZEB2 in pluripotent stem cell differentiation. Hum Mol Genet 2020;29:2535-50. [PMID: 32628253 DOI: 10.1093/hmg/ddaa141] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 4.0] [Reference Citation Analysis]
36 McCole RB, Erceg J, Saylor W, Wu CT. Ultraconserved Elements Occupy Specific Arenas of Three-Dimensional Mammalian Genome Organization. Cell Rep 2018;24:479-88. [PMID: 29996107 DOI: 10.1016/j.celrep.2018.06.031] [Cited by in Crossref: 12] [Cited by in F6Publishing: 8] [Article Influence: 4.0] [Reference Citation Analysis]
37 Khateb M, Azriel A, Levi BZ. The Third Intron of IRF8 Is a Cell-Type-Specific Chromatin Priming Element during Mouse Embryonal Stem Cell Differentiation. J Mol Biol 2019;431:210-22. [PMID: 30502383 DOI: 10.1016/j.jmb.2018.11.022] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.3] [Reference Citation Analysis]
38 Si N, Meng X, Lu X, Liu Z, Qi Z, Wang L, Li C, Yang M, Zhang Y, Wang C, Guo P, Zhu L, Liu L, Li Z, Zhang Z, Cai Z, Pan B, Jiang H, Zhang X. Duplications involving the long range HMX1 enhancer are associated with human isolated bilateral concha-type microtia. J Transl Med 2020;18:244. [PMID: 32552830 DOI: 10.1186/s12967-020-02409-6] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
39 Leask M, Dowdle A, Salvesen H, Topless R, Fadason T, Wei W, Schierding W, Marsman J, Antony J, O'Sullivan JM, Merriman TR, Horsfield JA. Functional Urate-Associated Genetic Variants Influence Expression of lincRNAs LINC01229 and MAFTRR. Front Genet 2018;9:733. [PMID: 30719032 DOI: 10.3389/fgene.2018.00733] [Cited by in Crossref: 10] [Cited by in F6Publishing: 11] [Article Influence: 3.3] [Reference Citation Analysis]
40 Fico A, Fiorenzano A, Pascale E, Patriarca EJ, Minchiotti G. Long non-coding RNA in stem cell pluripotency and lineage commitment: functions and evolutionary conservation. Cell Mol Life Sci 2019;76:1459-71. [PMID: 30607432 DOI: 10.1007/s00018-018-3000-z] [Cited by in Crossref: 29] [Cited by in F6Publishing: 29] [Article Influence: 9.7] [Reference Citation Analysis]
41 Inoue J, Saitou N. dbCNS: A New Database for Conserved Noncoding Sequences. Mol Biol Evol 2021;38:1665-76. [PMID: 33196844 DOI: 10.1093/molbev/msaa296] [Reference Citation Analysis]
42 Protasova MS, Andreeva TV, Rogaev EI. Factors Regulating the Activity of LINE1 Retrotransposons. Genes (Basel) 2021;12:1562. [PMID: 34680956 DOI: 10.3390/genes12101562] [Reference Citation Analysis]