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For: Barría MI, González A, Vera-Otarola J, León U, Vollrath V, Marsac D, Monasterio O, Pérez-Acle T, Soza A, López-Lastra M. Analysis of natural variants of the hepatitis C virus internal ribosome entry site reveals that primary sequence plays a key role in cap-independent translation. Nucleic Acids Res. 2009;37:957-971. [PMID: 19106142 DOI: 10.1093/nar/gkn1022] [Cited by in Crossref: 39] [Cited by in F6Publishing: 40] [Article Influence: 2.8] [Reference Citation Analysis]
Number Citing Articles
1 Chan SW. Establishment of chronic hepatitis C virus infection: Translational evasion of oxidative defence. World J Gastroenterol 2014; 20(11): 2785-2800 [PMID: 24659872 DOI: 10.3748/wjg.v20.i11.2785] [Cited by in CrossRef: 7] [Cited by in F6Publishing: 4] [Article Influence: 0.9] [Reference Citation Analysis]
2 Vera-Otarola J, Solis L, Lowy F, Olguín V, Angulo J, Pino K, Tischler ND, Otth C, Padula P, López-Lastra M. The Andes Orthohantavirus NSs Protein Antagonizes the Type I Interferon Response by Inhibiting MAVS Signaling. J Virol 2020;94:e00454-20. [PMID: 32321811 DOI: 10.1128/JVI.00454-20] [Cited by in Crossref: 11] [Cited by in F6Publishing: 8] [Article Influence: 5.5] [Reference Citation Analysis]
3 Khawaja A, Vopalensky V, Pospisek M. Understanding the potential of hepatitis C virus internal ribosome entry site domains to modulate translation initiation via their structure and function. Wiley Interdiscip Rev RNA 2015;6:211-24. [PMID: 25352252 DOI: 10.1002/wrna.1268] [Cited by in Crossref: 19] [Cited by in F6Publishing: 20] [Article Influence: 2.4] [Reference Citation Analysis]
4 Romero-López C, Berzal-Herranz A. The Role of the RNA-RNA Interactome in the Hepatitis C Virus Life Cycle. Int J Mol Sci 2020;21:E1479. [PMID: 32098260 DOI: 10.3390/ijms21041479] [Cited by in Crossref: 9] [Cited by in F6Publishing: 9] [Article Influence: 4.5] [Reference Citation Analysis]
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6 Moretti F, Bolcic F, Mammana L, Bouzas MB, Laufer N, Quarleri J. The hepatitis C virus 5'UTR genomic region remains highly conserved under HAART: a 4- to 8-year longitudinal study from HCV/HIV co-infected patients. AIDS Res Hum Retroviruses 2010;26:527-32. [PMID: 20455757 DOI: 10.1089/aid.2009.0237] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 0.3] [Reference Citation Analysis]
7 Lozano G, Francisco-Velilla R, Martinez-Salas E. Deconstructing internal ribosome entry site elements: an update of structural motifs and functional divergences. Open Biol 2018;8:180155. [PMID: 30487301 DOI: 10.1098/rsob.180155] [Cited by in Crossref: 10] [Cited by in F6Publishing: 10] [Article Influence: 2.5] [Reference Citation Analysis]
8 Vera-Otarola J, Soto-Rifo R, Ricci EP, Ohlmann T, Darlix JL, López-Lastra M. The 3' untranslated region of the Andes hantavirus small mRNA functionally replaces the poly(A) tail and stimulates cap-dependent translation initiation from the viral mRNA. J Virol 2010;84:10420-4. [PMID: 20660206 DOI: 10.1128/JVI.01270-10] [Cited by in Crossref: 11] [Cited by in F6Publishing: 7] [Article Influence: 0.9] [Reference Citation Analysis]
9 Churkin A, Cohen M, Shemer-Avni Y, Barash D. Bioinformatic analysis of the neutrality of RNA secondary structure elements across genotypes reveals evidence for direct evolution of genetic robustness in HCV. J Bioinform Comput Biol. 2010;8:1013-1026. [PMID: 21121024 DOI: 10.1142/s0219720010005087] [Cited by in Crossref: 8] [Cited by in F6Publishing: 7] [Article Influence: 0.7] [Reference Citation Analysis]
10 Carvajal F, Vallejos M, Walters B, Contreras N, Hertz MI, Olivares E, Cáceres CJ, Pino K, Letelier A, Thompson SR, López-Lastra M. Structural domains within the HIV-1 mRNA and the ribosomal protein S25 influence cap-independent translation initiation. FEBS J 2016;283:2508-27. [PMID: 27191820 DOI: 10.1111/febs.13756] [Cited by in Crossref: 20] [Cited by in F6Publishing: 19] [Article Influence: 3.3] [Reference Citation Analysis]
11 Olivares E, Landry DM, Cáceres CJ, Pino K, Rossi F, Navarrete C, Huidobro-Toro JP, Thompson SR, López-Lastra M. The 5' untranslated region of the human T-cell lymphotropic virus type 1 mRNA enables cap-independent translation initiation. J Virol 2014;88:5936-55. [PMID: 24623421 DOI: 10.1128/JVI.00279-14] [Cited by in Crossref: 21] [Cited by in F6Publishing: 17] [Article Influence: 2.6] [Reference Citation Analysis]
12 Cáceres CJ, Angulo J, Lowy F, Contreras N, Walters B, Olivares E, Allouche D, Merviel A, Pino K, Sargueil B, Thompson SR, López-Lastra M. Non-canonical translation initiation of the spliced mRNA encoding the human T-cell leukemia virus type 1 basic leucine zipper protein. Nucleic Acids Res 2018;46:11030-47. [PMID: 30215750 DOI: 10.1093/nar/gky802] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 2.3] [Reference Citation Analysis]
13 Shi G, Yagyu F, Shimizu Y, Shimizu K, Oshima M, Iwamoto A, Gao B, Liu W, Gao GF, Kitamura Y. Flow cytometric assay using two fluorescent proteins for the function of the internal ribosome entry site of hepatitis C virus. Cytometry A 2011;79:653-60. [PMID: 21710641 DOI: 10.1002/cyto.a.21094] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.3] [Reference Citation Analysis]
14 Ashraf A, Chakravarti A, Roy P, Kar P, Siddiqui O. Frequency of nucleotide sequence variations in the internal ribosome entry site region of hepatitis C virus RNA isolated from responding and non-responding patients with hepatitis C virus genotype 3 infection. Virusdisease 2016;27:251-9. [PMID: 28466036 DOI: 10.1007/s13337-016-0335-7] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.2] [Reference Citation Analysis]
15 Rivas-Aravena A, Ramdohr P, Vallejos M, Valiente-Echeverría F, Dormoy-Raclet V, Rodríguez F, Pino K, Holzmann C, Huidobro-Toro JP, Gallouzi IE. The Elav-like protein HuR exerts translational control of viral internal ribosome entry sites. Virology. 2009;392:178-185. [PMID: 19647848 DOI: 10.1016/j.virol.2009.06.050] [Cited by in Crossref: 47] [Cited by in F6Publishing: 45] [Article Influence: 3.6] [Reference Citation Analysis]
16 Martínez-Salas E, Lozano G, Fernandez-Chamorro J, Francisco-Velilla R, Galan A, Diaz R. RNA-binding proteins impacting on internal initiation of translation. Int J Mol Sci. 2013;14:21705-21726. [PMID: 24189219 DOI: 10.3390/ijms141121705] [Cited by in Crossref: 35] [Cited by in F6Publishing: 34] [Article Influence: 3.9] [Reference Citation Analysis]
17 Piñeiro D, Martinez-Salas E. RNA structural elements of hepatitis C virus controlling viral RNA translation and the implications for viral pathogenesis. Viruses 2012;4:2233-50. [PMID: 23202462 DOI: 10.3390/v4102233] [Cited by in Crossref: 24] [Cited by in F6Publishing: 22] [Article Influence: 2.4] [Reference Citation Analysis]
18 Romero-López C, Berzal-Herranz A. The functional RNA domain 5BSL3.2 within the NS5B coding sequence influences hepatitis C virus IRES-mediated translation. Cell Mol Life Sci. 2012;69:103-113. [PMID: 21598019 DOI: 10.1007/s00018-011-0729-z] [Cited by in Crossref: 44] [Cited by in F6Publishing: 44] [Article Influence: 4.0] [Reference Citation Analysis]
19 Valiente-Echeverría F, Vallejos M, Monette A, Pino K, Letelier A, Huidobro-Toro JP, Mouland AJ, López-Lastra M. A cis-acting element present within the Gag open reading frame negatively impacts on the activity of the HIV-1 IRES. PLoS One 2013;8:e56962. [PMID: 23451120 DOI: 10.1371/journal.pone.0056962] [Cited by in Crossref: 15] [Cited by in F6Publishing: 14] [Article Influence: 1.7] [Reference Citation Analysis]
20 Mauro VP, Matsuda D. Translation regulation by ribosomes: Increased complexity and expanded scope. RNA Biol 2016;13:748-55. [PMID: 26513496 DOI: 10.1080/15476286.2015.1107701] [Cited by in Crossref: 14] [Cited by in F6Publishing: 13] [Article Influence: 2.0] [Reference Citation Analysis]
21 Floden EW, Khawaja A, Vopálenský V, Pospíšek M. HCVIVdb: The hepatitis-C IRES variation database. BMC Microbiol 2016;16:187. [PMID: 27527702 DOI: 10.1186/s12866-016-0804-6] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 0.7] [Reference Citation Analysis]
22 Romero-López C, Berzal-Herranz A. A long-range RNA-RNA interaction between the 5’ and 3’ ends of the HCV genome. RNA. 2009;15:1740-1752. [PMID: 19605533 DOI: 10.1261/rna.1680809] [Cited by in Crossref: 89] [Cited by in F6Publishing: 87] [Article Influence: 6.8] [Reference Citation Analysis]
23 Cáceres CJ, Angulo J, Contreras N, Pino K, Vera-otarola J, López-lastra M. Targeting deoxyhypusine hydroxylase activity impairs cap-independent translation initiation driven by the 5'untranslated region of the HIV-1, HTLV-1, and MMTV mRNAs. Antiviral Research 2016;134:192-206. [DOI: 10.1016/j.antiviral.2016.09.006] [Cited by in Crossref: 12] [Cited by in F6Publishing: 11] [Article Influence: 2.0] [Reference Citation Analysis]
24 de Breyne S, Soto-Rifo R, López-Lastra M, Ohlmann T. Translation initiation is driven by different mechanisms on the HIV-1 and HIV-2 genomic RNAs. Virus Res. 2013;171:366-381. [PMID: 23079111 DOI: 10.1016/j.virusres.2012.10.006] [Cited by in Crossref: 25] [Cited by in F6Publishing: 25] [Article Influence: 2.5] [Reference Citation Analysis]
25 Revie D, Alberti MO, Prichard JG, Kelley AS, Salahuddin SZ. Analysis of the 5’UTR of HCV genotype 3 grown in vitro in human B cells, T cells, and macrophages. Virol J. 2010;7:155. [PMID: 20626910 DOI: 10.1186/1743-422x-7-155] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 0.1] [Reference Citation Analysis]
26 López-Lastra M, Ramdohr P, Letelier A, Vallejos M, Vera-Otarola J, Valiente-Echeverría F. Translation initiation of viral mRNAs. Rev Med Virol 2010;20:177-95. [PMID: 20440748 DOI: 10.1002/rmv.649] [Cited by in Crossref: 33] [Cited by in F6Publishing: 26] [Article Influence: 2.8] [Reference Citation Analysis]
27 Vera-Otarola J, Barría MI, León U, Carvallo P, Soza A, López-Lastra M. Is single-strand conformation polymorphism analysis of the full 5' untranslated region an adequate approach to study hepatitis C virus quasispecies distribution? J Virol 2009;83:9018-21. [PMID: 19553315 DOI: 10.1128/JVI.00971-09] [Cited by in Crossref: 6] [Cited by in F6Publishing: 3] [Article Influence: 0.5] [Reference Citation Analysis]
28 López-ulloa B, Fuentes Y, Pizarro-ortega MS, López-lastra M. RNA-Binding Proteins as Regulators of Internal Initiation of Viral mRNA Translation. Viruses 2022;14:188. [DOI: 10.3390/v14020188] [Reference Citation Analysis]
29 Matsuda D, Mauro VP. Base pairing between hepatitis C virus RNA and 18S rRNA is required for IRES-dependent translation initiation in vivo. Proc Natl Acad Sci U S A 2014;111:15385-9. [PMID: 25313046 DOI: 10.1073/pnas.1413472111] [Cited by in Crossref: 34] [Cited by in F6Publishing: 32] [Article Influence: 4.3] [Reference Citation Analysis]
30 Vallejos M, Ramdohr P, Valiente-Echeverría F, Tapia K, Rodriguez FE, Lowy F, Huidobro-Toro JP, Dangerfield JA, López-Lastra M. The 5'-untranslated region of the mouse mammary tumor virus mRNA exhibits cap-independent translation initiation. Nucleic Acids Res 2010;38:618-32. [PMID: 19889724 DOI: 10.1093/nar/gkp890] [Cited by in Crossref: 23] [Cited by in F6Publishing: 24] [Article Influence: 1.8] [Reference Citation Analysis]
31 Souii A, Ben M'hadheb-Gharbi M, Gharbi J. Role of RNA structure motifs in IRES-dependent translation initiation of the coxsackievirus B3: new insights for developing live-attenuated strains for vaccines and gene therapy. Mol Biotechnol 2013;55:179-202. [PMID: 23881360 DOI: 10.1007/s12033-013-9674-4] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.4] [Reference Citation Analysis]
32 Vera-Otarola J, Solis L, Soto-Rifo R, Ricci EP, Pino K, Tischler ND, Ohlmann T, Darlix JL, López-Lastra M. The Andes hantavirus NSs protein is expressed from the viral small mRNA by a leaky scanning mechanism. J Virol 2012;86:2176-87. [PMID: 22156529 DOI: 10.1128/JVI.06223-11] [Cited by in Crossref: 43] [Cited by in F6Publishing: 35] [Article Influence: 3.9] [Reference Citation Analysis]
33 Balvay L, Soto Rifo R, Ricci EP, Decimo D, Ohlmann T. Structural and functional diversity of viral IRESes. Biochim Biophys Acta 2009;1789:542-57. [PMID: 19632368 DOI: 10.1016/j.bbagrm.2009.07.005] [Cited by in Crossref: 129] [Cited by in F6Publishing: 120] [Article Influence: 9.9] [Reference Citation Analysis]
34 Souii A, Gharbi J, Ben M'hadheb-Gharbi M. Impaired binding of standard initiation factors eIF3b, eIF4G and eIF4B to domain V of the live-attenuated coxsackievirus B3 Sabin3-like IRES--alternatives for 5'UTR-related cardiovirulence mechanisms. Diagn Pathol 2013;8:161. [PMID: 24063684 DOI: 10.1186/1746-1596-8-161] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.3] [Reference Citation Analysis]
35 Cáceres CJ, Contreras N, Angulo J, Vera-Otarola J, Pino-Ajenjo C, Llorian M, Ameur M, Lisboa F, Pino K, Lowy F, Sargueil B, López-Lastra M. Polypyrimidine tract-binding protein binds to the 5' untranslated region of the mouse mammary tumor virus mRNA and stimulates cap-independent translation initiation. FEBS J 2016;283:1880-901. [PMID: 26972759 DOI: 10.1111/febs.13708] [Cited by in Crossref: 7] [Cited by in F6Publishing: 6] [Article Influence: 1.2] [Reference Citation Analysis]
36 Angulo J, Pino K, Pavez C, Biel F, Labbé P, Miquel JF, Soza A, López-Lastra M. Genetic variations in host IL28B links to the detection of peripheral blood mononuclear cells-associated hepatitis C virus RNA in chronically infected patients. J Viral Hepat. 2013;20:263-272. [PMID: 23490371 DOI: 10.1111/jvh.12076] [Cited by in Crossref: 16] [Cited by in F6Publishing: 12] [Article Influence: 1.8] [Reference Citation Analysis]
37 Vallejos M, Carvajal F, Pino K, Navarrete C, Ferres M, Huidobro-Toro JP, Sargueil B, López-Lastra M. Functional and structural analysis of the internal ribosome entry site present in the mRNA of natural variants of the HIV-1. PLoS One 2012;7:e35031. [PMID: 22496887 DOI: 10.1371/journal.pone.0035031] [Cited by in Crossref: 28] [Cited by in F6Publishing: 25] [Article Influence: 2.8] [Reference Citation Analysis]
38 Romero-López C, Berzal-Herranz B, Gómez J, Berzal-Herranz A. An engineered inhibitor RNA that efficiently interferes with hepatitis C virus translation and replication. Antiviral Res 2012;94:131-8. [PMID: 22426470 DOI: 10.1016/j.antiviral.2012.02.015] [Cited by in Crossref: 19] [Cited by in F6Publishing: 20] [Article Influence: 1.9] [Reference Citation Analysis]
39 Fuentes-villalobos F, Farkas C, Riquelme-barrios S, Armijo ME, Soto-rifo R, Pincheira R, Castro AF. DISC1 promotes translation maintenance during sodium arsenite-induced oxidative stress. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 2019;1862:657-69. [DOI: 10.1016/j.bbagrm.2019.05.001] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.7] [Reference Citation Analysis]
40 Angulo J, Ulryck N, Deforges J, Chamond N, Lopez-Lastra M, Masquida B, Sargueil B. LOOP IIId of the HCV IRES is essential for the structural rearrangement of the 40S-HCV IRES complex. Nucleic Acids Res 2016;44:1309-25. [PMID: 26626152 DOI: 10.1093/nar/gkv1325] [Cited by in Crossref: 23] [Cited by in F6Publishing: 22] [Article Influence: 3.3] [Reference Citation Analysis]
41 Fernández-García L, Angulo J, Ramos H, Barrera A, Pino K, Vera-Otarola J, López-Lastra M. The internal ribosome entry site of the Dengue virus mRNA is active when cap-dependent translation initiation is inhibited. J Virol 2020:JVI. [PMID: 33298544 DOI: 10.1128/JVI.01998-20] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 2.0] [Reference Citation Analysis]