BPG is committed to discovery and dissemination of knowledge
Cited by in F6Publishing
For: Coleman JR, Papamichail D, Yano M, García-Suárez Mdel M, Pirofski LA. Designed reduction of Streptococcus pneumoniae pathogenicity via synthetic changes in virulence factor codon-pair bias. J Infect Dis 2011;203:1264-73. [PMID: 21343143 DOI: 10.1093/infdis/jir010] [Cited by in Crossref: 30] [Cited by in F6Publishing: 27] [Article Influence: 2.7] [Reference Citation Analysis]
Number Citing Articles
1 Neill DR, Mitchell TJ, Kadioglu A. Pneumolysin. Streptococcus Pneumoniae. Elsevier; 2015. pp. 257-75. [DOI: 10.1016/b978-0-12-410530-0.00014-4] [Cited by in Crossref: 2] [Article Influence: 0.3] [Reference Citation Analysis]
2 Gould N, Hendy O, Papamichail D. Computational tools and algorithms for designing customized synthetic genes. Front Bioeng Biotechnol 2014;2:41. [PMID: 25340050 DOI: 10.3389/fbioe.2014.00041] [Cited by in Crossref: 43] [Cited by in F6Publishing: 33] [Article Influence: 5.4] [Reference Citation Analysis]
3 Khan MN, Coleman JR, Vernatter J, Varshney AK, Dufaud C, Pirofski LA. An ahemolytic pneumolysin of Streptococcus pneumoniae manipulates human innate and CD4⁺ T-cell responses and reduces resistance to colonization in mice in a serotype-independent manner. J Infect Dis 2014;210:1658-69. [PMID: 25001458 DOI: 10.1093/infdis/jiu321] [Cited by in Crossref: 13] [Cited by in F6Publishing: 13] [Article Influence: 1.6] [Reference Citation Analysis]
4 Vernatter J, Pirofski LA. Current concepts in host-microbe interaction leading to pneumococcal pneumonia. Curr Opin Infect Dis 2013;26:277-83. [PMID: 23571695 DOI: 10.1097/QCO.0b013e3283608419] [Cited by in Crossref: 37] [Cited by in F6Publishing: 24] [Article Influence: 4.1] [Reference Citation Analysis]
5 Le Nouën C, Brock LG, Luongo C, McCarty T, Yang L, Mehedi M, Wimmer E, Mueller S, Collins PL, Buchholz UJ, DiNapoli JM. Attenuation of human respiratory syncytial virus by genome-scale codon-pair deoptimization. Proc Natl Acad Sci U S A 2014;111:13169-74. [PMID: 25157129 DOI: 10.1073/pnas.1411290111] [Cited by in Crossref: 91] [Cited by in F6Publishing: 82] [Article Influence: 11.4] [Reference Citation Analysis]
6 Martínez MA, Jordan-Paiz A, Franco S, Nevot M. Synonymous genome recoding: a tool to explore microbial biology and new therapeutic strategies. Nucleic Acids Res 2019;47:10506-19. [PMID: 31584076 DOI: 10.1093/nar/gkz831] [Cited by in Crossref: 10] [Cited by in F6Publishing: 9] [Article Influence: 5.0] [Reference Citation Analysis]
7 Kames J, Holcomb DD, Kimchi O, DiCuccio M, Hamasaki-Katagiri N, Wang T, Komar AA, Alexaki A, Kimchi-Sarfaty C. Sequence analysis of SARS-CoV-2 genome reveals features important for vaccine design. Sci Rep 2020;10:15643. [PMID: 32973171 DOI: 10.1038/s41598-020-72533-2] [Cited by in Crossref: 11] [Cited by in F6Publishing: 16] [Article Influence: 5.5] [Reference Citation Analysis]
8 Weber S, Tian H, van Rooijen N, Pirofski LA. A serotype 3 pneumococcal capsular polysaccharide-specific monoclonal antibody requires Fcγ receptor III and macrophages to mediate protection against pneumococcal pneumonia in mice. Infect Immun 2012;80:1314-22. [PMID: 22290146 DOI: 10.1128/IAI.06081-11] [Cited by in Crossref: 22] [Cited by in F6Publishing: 15] [Article Influence: 2.2] [Reference Citation Analysis]
9 Seyoum B, Yano M, Pirofski LA. The innate immune response to Streptococcus pneumoniae in the lung depends on serotype and host response. Vaccine 2011;29:8002-11. [PMID: 21864623 DOI: 10.1016/j.vaccine.2011.08.064] [Cited by in Crossref: 14] [Cited by in F6Publishing: 12] [Article Influence: 1.3] [Reference Citation Analysis]
10 Yano M, Gohil S, Coleman JR, Manix C, Pirofski LA. Antibodies to Streptococcus pneumoniae capsular polysaccharide enhance pneumococcal quorum sensing. mBio 2011;2:e00176-11. [PMID: 21917597 DOI: 10.1128/mBio.00176-11] [Cited by in Crossref: 24] [Cited by in F6Publishing: 22] [Article Influence: 2.2] [Reference Citation Analysis]
11 Behera P, Kutty VH, Kumar A, Sharma B. Changing the Codon Usage of hfq Gene has Profound Effect on Phenotype and Pathogenicity of Salmonella Typhimurium. Curr Microbiol 2016;72:288-96. [PMID: 26620536 DOI: 10.1007/s00284-015-0951-2] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 0.6] [Reference Citation Analysis]
12 Casadevall A, Pirofski LA. A new synthesis for antibody-mediated immunity. Nat Immunol 2011;13:21-8. [PMID: 22179281 DOI: 10.1038/ni.2184] [Cited by in Crossref: 112] [Cited by in F6Publishing: 95] [Article Influence: 10.2] [Reference Citation Analysis]
13 Gohil SK, Heo M, Schoenbaum EE, Celentano D, Pirofski LA. CD8+ T cells and risk for bacterial pneumonia and all-cause mortality among HIV-infected women. J Acquir Immune Defic Syndr 2012;60:191-8. [PMID: 22334070 DOI: 10.1097/QAI.0b013e31824d90fe] [Cited by in Crossref: 9] [Cited by in F6Publishing: 6] [Article Influence: 0.9] [Reference Citation Analysis]
14 Hofmeyer KA, Scandiuzzi L, Ghosh K, Pirofski LA, Zang X. Tissue-expressed B7x affects the immune response to and outcome of lethal pulmonary infection. J Immunol 2012;189:3054-63. [PMID: 22855708 DOI: 10.4049/jimmunol.1200701] [Cited by in Crossref: 17] [Cited by in F6Publishing: 14] [Article Influence: 1.7] [Reference Citation Analysis]
15 Runco LM, Stauft CB, Coleman JR. Tailoring the Immune Response via Customization of Pathogen Gene Expression. J Pathog 2014;2014:651568. [PMID: 24719769 DOI: 10.1155/2014/651568] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.3] [Reference Citation Analysis]
16 Lee MHP, Tan CW, Tee HK, Ong KC, Sam IC, Chan YF. Vaccine candidates generated by codon and codon pair deoptimization of enterovirus A71 protect against lethal challenge in mice. Vaccine 2021;39:1708-20. [PMID: 33640144 DOI: 10.1016/j.vaccine.2021.02.024] [Reference Citation Analysis]
17 Jordan-Paiz A, Franco S, Martínez MA. Impact of Synonymous Genome Recoding on the HIV Life Cycle. Front Microbiol 2021;12:606087. [PMID: 33796084 DOI: 10.3389/fmicb.2021.606087] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
18 Pirofski LA, Casadevall A. Q and A: What is a pathogen? A question that begs the point. BMC Biol 2012;10:6. [PMID: 22293325 DOI: 10.1186/1741-7007-10-6] [Cited by in Crossref: 64] [Cited by in F6Publishing: 52] [Article Influence: 6.4] [Reference Citation Analysis]
19 Cima-Cabal MD, Vazquez F, de Los Toyos JR, Del Mar García-Suárez M. Protein Expression Analysis by Western Blot and Protein-Protein Interactions. Methods Mol Biol 2019;1968:101-11. [PMID: 30929209 DOI: 10.1007/978-1-4939-9199-0_9] [Cited by in Crossref: 4] [Cited by in F6Publishing: 1] [Article Influence: 1.3] [Reference Citation Analysis]
20 Kuo J, Stirling F, Lau YH, Shulgina Y, Way JC, Silver PA. Synthetic genome recoding: new genetic codes for new features. Curr Genet 2018;64:327-33. [PMID: 28983660 DOI: 10.1007/s00294-017-0754-z] [Cited by in Crossref: 14] [Cited by in F6Publishing: 13] [Article Influence: 2.8] [Reference Citation Analysis]
21 Gao L, Wang L, Huang C, Yang L, Guo XK, Yu Z, Liu Y, Yang P, Feng WH. HP-PRRSV is attenuated by de-optimization of codon pair bias in its RNA-dependent RNA polymerase nsp9 gene. Virology 2015;485:135-44. [PMID: 26247624 DOI: 10.1016/j.virol.2015.07.012] [Cited by in Crossref: 19] [Cited by in F6Publishing: 19] [Article Influence: 2.7] [Reference Citation Analysis]
22 Martínez MA, Jordan-paiz A, Franco S, Nevot M. Synonymous Virus Genome Recoding as a Tool to Impact Viral Fitness. Trends in Microbiology 2016;24:134-47. [DOI: 10.1016/j.tim.2015.11.002] [Cited by in Crossref: 53] [Cited by in F6Publishing: 40] [Article Influence: 8.8] [Reference Citation Analysis]
23 Habibi P, Prado GS, Pelegrini PB, Hefferon KL, Soccol CR, Grossi-de-sa MF. Optimization of inside and outside factors to improve recombinant protein yield in plant. Plant Cell Tiss Organ Cult 2017;130:449-67. [DOI: 10.1007/s11240-017-1240-5] [Cited by in Crossref: 12] [Cited by in F6Publishing: 2] [Article Influence: 2.4] [Reference Citation Analysis]
24 Cockeran R, Steel HC, Theron AJ, Mitchell TJ, Feldman C, Anderson R. Characterization of the interactions of the pneumolysoid, Δ6 PLY, with human neutrophils in vitro. Vaccine 2011;29:8780-2. [PMID: 21968446 DOI: 10.1016/j.vaccine.2011.09.080] [Cited by in Crossref: 8] [Cited by in F6Publishing: 8] [Article Influence: 0.7] [Reference Citation Analysis]
25 Osterrieder N, Kunec D. Attenuation of Viruses by Large-Scale Recoding of their Genomes: the Selection Is Always Biased. Curr Clin Microbiol Rep 2018;5:66-72. [PMID: 32226716 DOI: 10.1007/s40588-018-0080-3] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.8] [Reference Citation Analysis]
26 Kames J, Holcomb DD, Kimchi O, DiCuccio M, Hamasaki-Katagiri N, Wang T, Komar AA, Alexaki A, Kimchi-Sarfaty C. Sequence analysis of SARS-CoV-2 genome reveals features important for vaccine design. bioRxiv 2020:2020. [PMID: 32511300 DOI: 10.1101/2020.03.30.016832] [Cited by in Crossref: 6] [Cited by in F6Publishing: 2] [Article Influence: 3.0] [Reference Citation Analysis]
27 Alexaki A, Kames J, Holcomb DD, Athey J, Santana-Quintero LV, Lam PVN, Hamasaki-Katagiri N, Osipova E, Simonyan V, Bar H, Komar AA, Kimchi-Sarfaty C. Codon and Codon-Pair Usage Tables (CoCoPUTs): Facilitating Genetic Variation Analyses and Recombinant Gene Design. J Mol Biol 2019;431:2434-41. [PMID: 31029701 DOI: 10.1016/j.jmb.2019.04.021] [Cited by in Crossref: 46] [Cited by in F6Publishing: 38] [Article Influence: 15.3] [Reference Citation Analysis]
28 Amaral FE, Parker D, Randis TM, Kulkarni R, Prince AS, Shirasu-Hiza MM, Ratner AJ. Rational manipulation of mRNA folding free energy allows rheostat control of pneumolysin production by Streptococcus pneumoniae. PLoS One 2015;10:e0119823. [PMID: 25798590 DOI: 10.1371/journal.pone.0119823] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 0.9] [Reference Citation Analysis]