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Cited by in F6Publishing
For: Li JW, Wan R, Yu CS, Co NN, Wong N, Chan TF. ViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution. Bioinformatics. 2013;29:649-651. [PMID: 23314323 DOI: 10.1093/bioinformatics/btt011] [Cited by in Crossref: 62] [Cited by in F6Publishing: 53] [Article Influence: 6.9] [Reference Citation Analysis]
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11 Zhu C, Wu L, Lv Y, Guan J, Bai X, Lin J, Liu T, Yang X, Robson SC, Sang X, Xue C, Zhao H. The fusion landscape of hepatocellular carcinoma. Mol Oncol 2019;13:1214-25. [PMID: 30903738 DOI: 10.1002/1878-0261.12479] [Cited by in Crossref: 8] [Cited by in F6Publishing: 6] [Article Influence: 2.7] [Reference Citation Analysis]
12 Cao S, Wendl MC, Wyczalkowski MA, Wylie K, Ye K, Jayasinghe R, Xie M, Wu S, Niu B, Grubb R 3rd, Johnson KJ, Gay H, Chen K, Rader JS, Dipersio JF, Chen F, Ding L. Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep 2016;6:28294. [PMID: 27339696 DOI: 10.1038/srep28294] [Cited by in Crossref: 37] [Cited by in F6Publishing: 34] [Article Influence: 6.2] [Reference Citation Analysis]
13 Forster M, Szymczak S, Ellinghaus D, Hemmrich G, Rühlemann M, Kraemer L, Mucha S, Wienbrandt L, Stanulla M, Franke A; UFO Sequencing Consortium within I-BFM Study Group. Vy-PER: eliminating false positive detection of virus integration events in next generation sequencing data. Sci Rep 2015;5:11534. [PMID: 26166306 DOI: 10.1038/srep11534] [Cited by in Crossref: 29] [Cited by in F6Publishing: 24] [Article Influence: 4.1] [Reference Citation Analysis]
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17 Samuels DC, Han L, Li J, Quanghu S, Clark TA, Shyr Y, Guo Y. Finding the lost treasures in exome sequencing data. Trends Genet 2013;29:593-9. [PMID: 23972387 DOI: 10.1016/j.tig.2013.07.006] [Cited by in Crossref: 99] [Cited by in F6Publishing: 84] [Article Influence: 11.0] [Reference Citation Analysis]
18 Katz JP, Pipas JM. SummonChimera infers integrated viral genomes with nucleotide precision from NGS data. BMC Bioinformatics 2014;15:348. [PMID: 25331652 DOI: 10.1186/s12859-014-0348-4] [Cited by in Crossref: 13] [Cited by in F6Publishing: 11] [Article Influence: 1.6] [Reference Citation Analysis]
19 Arsenijevic V, Davis-Dusenbery BN. Reproducible, Scalable Fusion Gene Detection from RNA-Seq. Methods Mol Biol 2016;1381:223-37. [PMID: 26667464 DOI: 10.1007/978-1-4939-3204-7_13] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 0.2] [Reference Citation Analysis]
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21 Hu Z, Ma D. The precision prevention and therapy of HPV-related cervical cancer: new concepts and clinical implications. Cancer Med 2018;7:5217-36. [PMID: 30589505 DOI: 10.1002/cam4.1501] [Cited by in Crossref: 33] [Cited by in F6Publishing: 27] [Article Influence: 8.3] [Reference Citation Analysis]
22 Chen X, Kost J, Li D. Comprehensive comparative analysis of methods and software for identifying viral integrations. Brief Bioinform 2019;20:2088-97. [PMID: 30102374 DOI: 10.1093/bib/bby070] [Cited by in Crossref: 18] [Cited by in F6Publishing: 13] [Article Influence: 9.0] [Reference Citation Analysis]
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24 Sekiba K, Otsuka M, Ohno M, Yamagami M, Kishikawa T, Suzuki T, Ishibashi R, Seimiya T, Tanaka E, Koike K. Hepatitis B virus pathogenesis: Fresh insights into hepatitis B virus RNA. World J Gastroenterol 2018; 24(21): 2261-2268 [PMID: 29881235 DOI: 10.3748/wjg.v24.i21.2261] [Cited by in CrossRef: 9] [Cited by in F6Publishing: 9] [Article Influence: 2.3] [Reference Citation Analysis]
25 Tennakoon C, Sung WK. BATVI: Fast, sensitive and accurate detection of virus integrations. BMC Bioinformatics 2017;18:71. [PMID: 28361674 DOI: 10.1186/s12859-017-1470-x] [Cited by in Crossref: 12] [Cited by in F6Publishing: 12] [Article Influence: 2.4] [Reference Citation Analysis]
26 Shieh FS, Jongeneel P, Steffen JD, Lin S, Jain S, Song W, Su YH. ChimericSeq: An open-source, user-friendly interface for analyzing NGS data to identify and characterize viral-host chimeric sequences. PLoS One 2017;12:e0182843. [PMID: 28829778 DOI: 10.1371/journal.pone.0182843] [Cited by in Crossref: 6] [Cited by in F6Publishing: 4] [Article Influence: 1.2] [Reference Citation Analysis]
27 Cameron DL, Jacobs N, Roepman P, Priestley P, Cuppen E, Papenfuss AT. VIRUSBreakend: Viral Integration Recognition Using Single Breakends. Bioinformatics 2021:btab343. [PMID: 33973999 DOI: 10.1093/bioinformatics/btab343] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 3.0] [Reference Citation Analysis]
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