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For: Schäfer M, Schwender H, Merk S, Haferlach C, Ickstadt K, Dugas M. Integrated analysis of copy number alterations and gene expression: a bivariate assessment of equally directed abnormalities. Bioinformatics. 2009;25:3228-3235. [PMID: 19828576 DOI: 10.1093/bioinformatics/btp592] [Cited by in Crossref: 36] [Cited by in F6Publishing: 34] [Article Influence: 2.8] [Reference Citation Analysis]
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8 Jabs V, Edlund K, König H, Grinberg M, Madjar K, Rahnenführer J, Ekman S, Bergkvist M, Holmberg L, Ickstadt K, Botling J, Hengstler JG, Micke P. Integrative analysis of genome-wide gene copy number changes and gene expression in non-small cell lung cancer. PLoS One 2017;12:e0187246. [PMID: 29112949 DOI: 10.1371/journal.pone.0187246] [Cited by in Crossref: 22] [Cited by in F6Publishing: 23] [Article Influence: 4.4] [Reference Citation Analysis]
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12 Fang Z, Xiong Y, Zhang C, Li J, Liu L, Li M, Zhang W, Wan J. Coexistence of copy number increases of ZNF217 and CYP24A1 in colorectal cancers in a Chinese population. Oncol Lett 2010;1:925-30. [PMID: 22966406 DOI: 10.3892/ol_00000163] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 0.6] [Reference Citation Analysis]
13 Fang Z, Xiong Y, Li J, Liu L, Li M, Zhang C, Zhang W, Wan J. Copy-number increase of AURKA in gastric cancers in a Chinese population: a correlation with tumor progression. Med Oncol 2011;28:1017-22. [PMID: 20585902 DOI: 10.1007/s12032-010-9602-4] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 0.6] [Reference Citation Analysis]
14 Solvang HK, Lingjærde OC, Frigessi A, Børresen-Dale AL, Kristensen VN. Linear and non-linear dependencies between copy number aberrations and mRNA expression reveal distinct molecular pathways in breast cancer. BMC Bioinformatics 2011;12:197. [PMID: 21609452 DOI: 10.1186/1471-2105-12-197] [Cited by in Crossref: 25] [Cited by in F6Publishing: 20] [Article Influence: 2.3] [Reference Citation Analysis]
15 Kim D, Shin H, Song YS, Kim JH. Synergistic effect of different levels of genomic data for cancer clinical outcome prediction. Journal of Biomedical Informatics 2012;45:1191-8. [DOI: 10.1016/j.jbi.2012.07.008] [Cited by in Crossref: 67] [Cited by in F6Publishing: 50] [Article Influence: 6.7] [Reference Citation Analysis]
16 Wan J, Gao Y, Zhao X, Wu Q, Fu X, Shao Y, Yang H, Guan M, Yu B, Zhang W. The association between the copy-number variations of ZMAT4 and hematological malignancy. Hematology 2011;16:20-3. [PMID: 21269563 DOI: 10.1179/102453311X12902908411751] [Cited by in Crossref: 4] [Cited by in F6Publishing: 3] [Article Influence: 0.4] [Reference Citation Analysis]
17 Klein HU, Schäfer M, Porse BT, Hasemann MS, Ickstadt K, Dugas M. Integrative analysis of histone ChIP-seq and transcription data using Bayesian mixture models. Bioinformatics 2014;30:1154-62. [PMID: 24403540 DOI: 10.1093/bioinformatics/btu003] [Cited by in Crossref: 21] [Cited by in F6Publishing: 17] [Article Influence: 2.6] [Reference Citation Analysis]
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19 Yang H, Zhang C, Zhao X, Wu Q, Fu X, Yu B, Shao Y, Guan M, Zhang W, Wan J, Huang X. Analysis of copy number variations of BS69 in multiple types of hematological malignancies. Ann Hematol 2010;89:959-64. [DOI: 10.1007/s00277-010-0966-5] [Cited by in Crossref: 7] [Cited by in F6Publishing: 6] [Article Influence: 0.6] [Reference Citation Analysis]
20 Newton R, Wernisch L. A meta-analysis of multiple matched copy number and transcriptomics data sets for inferring gene regulatory relationships. PLoS One 2014;9:e105522. [PMID: 25148247 DOI: 10.1371/journal.pone.0105522] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 0.8] [Reference Citation Analysis]
21 Chu F, Feng Q, Qian Y, Zhang C, Fang Z, Shen G. ERBB2 gene amplification in oral squamous cell malignancies: a correlation with tumor progression and gene expression. Oral Surg Oral Med Oral Pathol Oral Radiol Endod 2011;112:90-5. [PMID: 21531597 DOI: 10.1016/j.tripleo.2011.01.026] [Cited by in Crossref: 2] [Cited by in F6Publishing: 4] [Article Influence: 0.2] [Reference Citation Analysis]
22 Wu C, Zhang Q, Jiang Y, Ma S. Robust network-based analysis of the associations between (epi)genetic measurements. J Multivar Anal 2018;168:119-30. [PMID: 30983643 DOI: 10.1016/j.jmva.2018.06.009] [Cited by in Crossref: 11] [Cited by in F6Publishing: 10] [Article Influence: 2.8] [Reference Citation Analysis]
23 Yang J, Wang X, Kim M, Xie Y, Xiao G. Detection of candidate tumor driver genes using a fully integrated Bayesian approach. Stat Med 2014;33:1784-800. [PMID: 24347204 DOI: 10.1002/sim.6066] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 0.2] [Reference Citation Analysis]
24 Zhang J, Gao Y, Zhao X, Guan M, Zhang W, Wan J, Yu B. Investigation of copy-number variations of C8orf4 in hematological malignancies. Med Oncol 2011;28 Suppl 1:S647-52. [PMID: 20878554 DOI: 10.1007/s12032-010-9698-6] [Cited by in Crossref: 8] [Cited by in F6Publishing: 8] [Article Influence: 0.7] [Reference Citation Analysis]
25 Schäfer M, Lkhagvasuren O, Klein HU, Elling C, Wüstefeld T, Müller-Tidow C, Zender L, Koschmieder S, Dugas M, Ickstadt K. Integrative analyses for omics data: a Bayesian mixture model to assess the concordance of ChIP-chip and ChIP-seq measurements. J Toxicol Environ Health A 2012;75:461-70. [PMID: 22686305 DOI: 10.1080/15287394.2012.674914] [Cited by in Crossref: 13] [Cited by in F6Publishing: 8] [Article Influence: 1.3] [Reference Citation Analysis]
26 Huang N, Shah PK, Li C. Lessons from a decade of integrating cancer copy number alterations with gene expression profiles. Brief Bioinform 2012;13:305-16. [PMID: 21949216 DOI: 10.1093/bib/bbr056] [Cited by in Crossref: 37] [Cited by in F6Publishing: 32] [Article Influence: 3.4] [Reference Citation Analysis]
27 Li Z, Fang ZY, Ding Y, Yao WT, Yang Y, Zhu ZQ, Wang W, Zhang QX. Amplifications of NCOA3 gene in colorectal cancers in a Chinese population. World J Gastroenterol 2012; 18(8): 855-860 [PMID: 22371647 DOI: 10.3748/wjg.v18.i8.855] [Cited by in CrossRef: 4] [Cited by in F6Publishing: 4] [Article Influence: 0.4] [Reference Citation Analysis]
28 Guan M, Liu L, Zhao X, Wu Q, Yu B, Shao Y, Yang H, Fu X, Wan J, Zhang W. Copy number variations of EphA3 are associated with multiple types of hematologic malignancies. Clin Lymphoma Myeloma Leuk 2011;11:50-3. [PMID: 21454190 DOI: 10.3816/CLML.2011.n.006] [Cited by in Crossref: 27] [Cited by in F6Publishing: 14] [Article Influence: 2.5] [Reference Citation Analysis]
29 Nemes S, Parris TZ, Danielsson A, Kannius-Janson M, Jonasson JM, Steineck G, Helou K. Segmented regression, a versatile tool to analyze mRNA levels in relation to DNA copy number aberrations. Genes Chromosomes Cancer 2012;51:77-82. [PMID: 22034095 DOI: 10.1002/gcc.20934] [Cited by in Crossref: 7] [Cited by in F6Publishing: 6] [Article Influence: 0.6] [Reference Citation Analysis]
30 Cava C, Bertoli G, Castiglioni I. Integrating genetics and epigenetics in breast cancer: biological insights, experimental, computational methods and therapeutic potential. BMC Syst Biol 2015;9:62. [PMID: 26391647 DOI: 10.1186/s12918-015-0211-x] [Cited by in Crossref: 31] [Cited by in F6Publishing: 26] [Article Influence: 4.4] [Reference Citation Analysis]
31 Lahti L, Schäfer M, Klein HU, Bicciato S, Dugas M. Cancer gene prioritization by integrative analysis of mRNA expression and DNA copy number data: a comparative review. Brief Bioinform 2013;14:27-35. [PMID: 22441573 DOI: 10.1093/bib/bbs005] [Cited by in Crossref: 25] [Cited by in F6Publishing: 20] [Article Influence: 2.5] [Reference Citation Analysis]
32 Sheng J, Deng HW, Calhoun VD, Wang YP. Integrated analysis of gene expression and copy number data on gene shaving using independent component analysis. IEEE/ACM Trans Comput Biol Bioinform 2011;8:1568-79. [PMID: 21519112 DOI: 10.1109/TCBB.2011.71] [Cited by in Crossref: 11] [Cited by in F6Publishing: 6] [Article Influence: 1.1] [Reference Citation Analysis]
33 Ferrari F, Solari A, Battaglia C, Bicciato S. PREDA: an R-package to identify regional variations in genomic data. Bioinformatics 2011;27:2446-7. [PMID: 21742634 DOI: 10.1093/bioinformatics/btr404] [Cited by in Crossref: 13] [Cited by in F6Publishing: 11] [Article Influence: 1.2] [Reference Citation Analysis]
34 van Wieringen WN, Unger K, Leday GG, Krijgsman O, de Menezes RX, Ylstra B, van de Wiel MA. Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses. BMC Bioinformatics 2012;13:80. [PMID: 22559006 DOI: 10.1186/1471-2105-13-80] [Cited by in Crossref: 13] [Cited by in F6Publishing: 14] [Article Influence: 1.3] [Reference Citation Analysis]