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For: Bbosa N, Ssemwanga D, Nsubuga RN, Salazar-Gonzalez JF, Salazar MG, Nanyonjo M, Kuteesa M, Seeley J, Kiwanuka N, Bagaya BS, Yebra G, Leigh-Brown A, Kaleebu P. Phylogeography of HIV-1 suggests that Ugandan fishing communities are a sink for, not a source of, virus from general populations. Sci Rep 2019;9:1051. [PMID: 30705307 DOI: 10.1038/s41598-018-37458-x] [Cited by in Crossref: 22] [Cited by in F6Publishing: 21] [Article Influence: 7.3] [Reference Citation Analysis]
Number Citing Articles
1 Pujol-Hodge E, Salazar-Gonzalez JF, Ssemwanga D, Charlebois ED, Ayieko J, Grant HE, Liegler T, Atkins KE, Kaleebu P, Kamya MR, Petersen M, Havlir DV, Leigh Brown AJ. Detection of HIV-1 Transmission Clusters from Dried Blood Spots within a Universal Test-and-Treat Trial in East Africa. Viruses 2022;14:1673. [PMID: 36016295 DOI: 10.3390/v14081673] [Reference Citation Analysis]
2 Kayondo HW, Ssekagiri A, Nabakooza G, Bbosa N, Ssemwanga D, Kaleebu P, Mwalili S, Mango JM, Leigh Brown AJ, Saenz RA, Galiwango R, Kitayimbwa JM. Employing phylogenetic tree shape statistics to resolve the underlying host population structure. BMC Bioinformatics 2021;22:546. [PMID: 34758743 DOI: 10.1186/s12859-021-04465-1] [Reference Citation Analysis]
3 Moshiri N, Smith DM, Mirarab S. HIV Care Prioritization Using Phylogenetic Branch Length. JAIDS Journal of Acquired Immune Deficiency Syndromes 2021;86:626-37. [DOI: 10.1097/qai.0000000000002612] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
4 Nduva GM, Nazziwa J, Hassan AS, Sanders EJ, Esbjörnsson J. The Role of Phylogenetics in Discerning HIV-1 Mixing among Vulnerable Populations and Geographic Regions in Sub-Saharan Africa: A Systematic Review. Viruses 2021;13:1174. [PMID: 34205246 DOI: 10.3390/v13061174] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
5 Bbosa N, Ssemwanga D, Nsubuga RN, Kiwanuka N, Bagaya BS, Kitayimbwa JM, Ssekagiri A, Yebra G, Kaleebu P, Leigh-Brown A. Phylogenetic Networks and Parameters Inferred from HIV Nucleotide Sequences of High-Risk and General Population Groups in Uganda: Implications for Epidemic Control. Viruses 2021;13:970. [PMID: 34073846 DOI: 10.3390/v13060970] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
6 Valdano E, Okano JT, Colizza V, Mitonga HK, Blower S. Using mobile phone data to reveal risk flow networks underlying the HIV epidemic in Namibia. Nat Commun 2021;12:2837. [PMID: 33990578 DOI: 10.1038/s41467-021-23051-w] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
7 Kuteesa MO, Webb EL, Kawuma R, Naluwugge J, Thadeus K, Ndekezi D, Seeley J. 'We shall drink until Lake Victoria dries up': Drivers of heavy drinking and illicit drug use among young Ugandans in fishing communities. Glob Public Health 2021;:1-17. [PMID: 33460355 DOI: 10.1080/17441692.2021.1873399] [Reference Citation Analysis]
8 Liu M, Han X, Zhao B, An M, He W, Wang Z, Qiu Y, Ding H, Shang H. Dynamics of HIV-1 Molecular Networks Reveal Effective Control of Large Transmission Clusters in an Area Affected by an Epidemic of Multiple HIV Subtypes. Front Microbiol 2020;11:604993. [PMID: 33281803 DOI: 10.3389/fmicb.2020.604993] [Cited by in Crossref: 1] [Cited by in F6Publishing: 4] [Article Influence: 0.5] [Reference Citation Analysis]
9 Ssemwanga D, Bbosa N, Nsubuga RN, Ssekagiri A, Kapaata A, Nannyonjo M, Nassolo F, Karabarinde A, Mugisha J, Seeley J, Yebra G, Leigh Brown A, Kaleebu P. The Molecular Epidemiology and Transmission Dynamics of HIV Type 1 in a General Population Cohort in Uganda. Viruses 2020;12:E1283. [PMID: 33182587 DOI: 10.3390/v12111283] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
10 Bbosa N, Ssemwanga D, Kaleebu P. Short Communication: Choosing the Right Program for the Identification of HIV-1 Transmission Networks from Nucleotide Sequences Sampled from Different Populations. AIDS Res Hum Retroviruses 2020;36:948-51. [PMID: 32693608 DOI: 10.1089/AID.2020.0033] [Cited by in Crossref: 1] [Article Influence: 0.5] [Reference Citation Analysis]
11 Omooja J, Nannyonjo M, Sanyu G, Nabirye SE, Nassolo F, Lunkuse S, Kapaata A, Segujja F, Kateete DP, Ssebaggala E, Bbosa N, Aling E, Nsubuga RN, Kaleebu P, Ssemwanga D. Rates of HIV-1 virological suppression and patterns of acquired drug resistance among fisherfolk on first-line antiretroviral therapy in Uganda. J Antimicrob Chemother 2019;74:3021-9. [PMID: 31257432 DOI: 10.1093/jac/dkz261] [Cited by in Crossref: 8] [Cited by in F6Publishing: 11] [Article Influence: 4.0] [Reference Citation Analysis]
12 Edoul G, Chia JE, Vidal N, Guichet E, Montavon C, Delaporte E, Mpoudi Ngole E, Ayouba A, Peeters M. High HIV burden and recent transmission chains in rural forest areas in southern Cameroon, where ancestors of HIV-1 have been identified in ape populations. Infect Genet Evol 2020;84:104358. [PMID: 32439500 DOI: 10.1016/j.meegid.2020.104358] [Reference Citation Analysis]
13 Vasylyeva TI, Zarebski A, Smyrnov P, Williams LD, Korobchuk A, Liulchuk M, Zadorozhna V, Nikolopoulos G, Paraskevis D, Schneider J, Skaathun B, Pybus OG, Friedman SR. Phylodynamics Helps to Evaluate the Impact of an HIV Prevention Intervention. Viruses 2020;12:E469. [PMID: 32326127 DOI: 10.3390/v12040469] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 1.5] [Reference Citation Analysis]
14 Ragonnet-Cronin M, Hodcroft EB, Wertheim JO. Understanding disclosed and cryptic HIV transmission risk via genetic analysis: what are we missing and when does it matter? Curr Opin HIV AIDS 2019;14:205-12. [PMID: 30946142 DOI: 10.1097/COH.0000000000000537] [Cited by in Crossref: 9] [Cited by in F6Publishing: 4] [Article Influence: 4.5] [Reference Citation Analysis]
15 Han X, Zhao B, An M, Zhong P, Shang H. Molecular network-based intervention brings us closer to ending the HIV pandemic. Front Med 2020;14:136-48. [PMID: 32206964 DOI: 10.1007/s11684-020-0756-y] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 3.0] [Reference Citation Analysis]
16 Bbosa N, Ssemwanga D, Ssekagiri A, Xi X, Mayanja Y, Bahemuka U, Seeley J, Pillay D, Abeler-Dörner L, Golubchik T, Fraser C, Kaleebu P, Ratmann O. Phylogenetic and Demographic Characterization of Directed HIV-1 Transmission Using Deep Sequences from High-Risk and General Population Cohorts/Groups in Uganda. Viruses 2020;12:E331. [PMID: 32197553 DOI: 10.3390/v12030331] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 3.0] [Reference Citation Analysis]
17 Grant HE, Hodcroft EB, Ssemwanga D, Kitayimbwa JM, Yebra G, Esquivel Gomez LR, Frampton D, Gall A, Kellam P, de Oliveira T, Bbosa N, Nsubuga RN, Kibengo F, Kwan TH, Lycett S, Kao R, Robertson DL, Ratmann O, Fraser C, Pillay D, Kaleebu P, Leigh Brown AJ. Pervasive and non-random recombination in near full-length HIV genomes from Uganda. Virus Evol 2020;6:veaa004. [PMID: 32395255 DOI: 10.1093/ve/veaa004] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
18 Ratmann O, Kagaayi J, Hall M, Golubchick T, Kigozi G, Xi X, Wymant C, Nakigozi G, Abeler-Dörner L, Bonsall D, Gall A, Hoppe A, Kellam P, Bazaale J, Kalibbala S, Laeyendecker O, Lessler J, Nalugoda F, Chang LW, de Oliveira T, Pillay D, Quinn TC, Reynolds SJ, Spencer SEF, Ssekubugu R, Serwadda D, Wawer MJ, Gray RH, Fraser C, Grabowski MK; Rakai Health Sciences Program and the Pangea HIV Consortium. Quantifying HIV transmission flow between high-prevalence hotspots and surrounding communities: a population-based study in Rakai, Uganda. Lancet HIV 2020;7:e173-83. [PMID: 31953184 DOI: 10.1016/S2352-3018(19)30378-9] [Cited by in Crossref: 17] [Cited by in F6Publishing: 12] [Article Influence: 8.5] [Reference Citation Analysis]
19 Bloomfield S, Vaughan T, Benschop J, Marshall J, Hayman D, Biggs P, Carter P, French N. Investigation of the validity of two Bayesian ancestral state reconstruction models for estimating Salmonella transmission during outbreaks. PLoS One 2019;14:e0214169. [PMID: 31329588 DOI: 10.1371/journal.pone.0214169] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.7] [Reference Citation Analysis]
20 Aturinde A, Farnaghi M, Pilesjö P, Mansourian A. Spatial analysis of HIV-TB co-clustering in Uganda. BMC Infect Dis 2019;19:612. [PMID: 31299907 DOI: 10.1186/s12879-019-4246-2] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 1.7] [Reference Citation Analysis]
21 Abeler-dörner L, Grabowski MK, Rambaut A, Pillay D, Fraser C. PANGEA-HIV 2: Phylogenetics And Networks for Generalised Epidemics in Africa. Current Opinion in HIV and AIDS 2019;14:173-80. [DOI: 10.1097/coh.0000000000000542] [Cited by in Crossref: 10] [Cited by in F6Publishing: 7] [Article Influence: 3.3] [Reference Citation Analysis]