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For: Benoit-Pilven C, Marchet C, Chautard E, Lima L, Lambert MP, Sacomoto G, Rey A, Cologne A, Terrone S, Dulaurier L, Claude JB, Bourgeois CF, Auboeuf D, Lacroix V. Complementarity of assembly-first and mapping-first approaches for alternative splicing annotation and differential analysis from RNAseq data. Sci Rep 2018;8:4307. [PMID: 29523794 DOI: 10.1038/s41598-018-21770-7] [Cited by in Crossref: 20] [Cited by in F6Publishing: 15] [Article Influence: 5.0] [Reference Citation Analysis]
Number Citing Articles
1 Tanaka I, Chakraborty A, Saulnier O, Benoit-Pilven C, Vacher S, Labiod D, Lam EWF, Bièche I, Delattre O, Pouzoulet F, Auboeuf D, Vagner S, Dutertre M. ZRANB2 and SYF2-mediated splicing programs converging on ECT2 are involved in breast cancer cell resistance to doxorubicin. Nucleic Acids Res 2020;48:2676-93. [PMID: 31943118 DOI: 10.1093/nar/gkz1213] [Cited by in Crossref: 9] [Cited by in F6Publishing: 9] [Article Influence: 4.5] [Reference Citation Analysis]
2 Majeed A, Singh A, Sharma RK, Jaitak V, Bhardwaj P. Comprehensive temporal reprogramming ensures dynamicity of transcriptomic profile for adaptive response in Taxus contorta. Mol Genet Genomics 2020;295:1401-14. [DOI: 10.1007/s00438-020-01709-2] [Cited by in Crossref: 4] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
3 Cologne A, Benoit-Pilven C, Besson A, Putoux A, Campan-Fournier A, Bober MB, De Die-Smulders CEM, Paulussen ADC, Pinson L, Toutain A, Roifman CM, Leutenegger AL, Mazoyer S, Edery P, Lacroix V. New insights into minor splicing-a transcriptomic analysis of cells derived from TALS patients. RNA 2019;25:1130-49. [PMID: 31175170 DOI: 10.1261/rna.071423.119] [Cited by in Crossref: 16] [Cited by in F6Publishing: 12] [Article Influence: 5.3] [Reference Citation Analysis]
4 Perrone B, La Cognata V, Sprovieri T, Ungaro C, Conforti FL, Andò S, Cavallaro S. Alternative Splicing of ALS Genes: Misregulation and Potential Therapies. Cell Mol Neurobiol 2020;40:1-14. [PMID: 31385134 DOI: 10.1007/s10571-019-00717-0] [Cited by in Crossref: 11] [Cited by in F6Publishing: 10] [Article Influence: 3.7] [Reference Citation Analysis]
5 Banerjee N, Kumar S, Annadurai A, Singh A, Singh PK, Singh J, Singh RK, Kumar S. An Early Season Perspective of Key Differentially Expressed Genes and Single Nucleotide Polymorphisms Involved in Sucrose Accumulation in Sugarcane. Tropical Plant Biol . [DOI: 10.1007/s12042-022-09311-z] [Reference Citation Analysis]
6 González-Barriga A, Lallemant L, Dincã DM, Braz SO, Polvèche H, Magneron P, Pionneau C, Huguet-Lachon A, Claude JB, Chhuon C, Guerrera IC, Bourgeois CF, Auboeuf D, Gourdon G, Gomes-Pereira M. Integrative Cell Type-Specific Multi-Omics Approaches Reveal Impaired Programs of Glial Cell Differentiation in Mouse Culture Models of DM1. Front Cell Neurosci 2021;15:662035. [PMID: 34025359 DOI: 10.3389/fncel.2021.662035] [Reference Citation Analysis]
7 Cordellier M, Schneider JM, Uhl G, Posnien N. Sex differences in spiders: from phenotype to genomics. Dev Genes Evol 2020;230:155-72. [PMID: 32052129 DOI: 10.1007/s00427-020-00657-6] [Cited by in Crossref: 7] [Cited by in F6Publishing: 3] [Article Influence: 3.5] [Reference Citation Analysis]
8 Lemaire S, Fontrodona N, Aubé F, Claude JB, Polvèche H, Modolo L, Bourgeois CF, Mortreux F, Auboeuf D. Characterizing the interplay between gene nucleotide composition bias and splicing. Genome Biol 2019;20:259. [PMID: 31783898 DOI: 10.1186/s13059-019-1869-y] [Cited by in Crossref: 7] [Cited by in F6Publishing: 6] [Article Influence: 2.3] [Reference Citation Analysis]
9 Knierim AB, Röthe J, Çakir MV, Lede V, Wilde C, Liebscher I, Thor D, Schöneberg T. Genetic basis of functional variability in adhesion G protein-coupled receptors. Sci Rep 2019;9:11036. [PMID: 31363148 DOI: 10.1038/s41598-019-46265-x] [Cited by in Crossref: 10] [Cited by in F6Publishing: 11] [Article Influence: 3.3] [Reference Citation Analysis]
10 Denti L, Pirola Y, Previtali M, Ceccato T, Della Vedova G, Rizzi R, Bonizzoni P. Shark: fishing relevant reads in an RNA-Seq sample. Bioinformatics 2021;37:464-72. [PMID: 32926128 DOI: 10.1093/bioinformatics/btaa779] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
11 Ameur LB, Marie P, Thenoz M, Giraud G, Combe E, Claude JB, Lemaire S, Fontrodona N, Polveche H, Bastien M, Gessain A, Wattel E, Bourgeois CF, Auboeuf D, Mortreux F. Intragenic recruitment of NF-κB drives splicing modifications upon activation by the oncogene Tax of HTLV-1. Nat Commun 2020;11:3045. [PMID: 32546717 DOI: 10.1038/s41467-020-16853-x] [Cited by in Crossref: 5] [Cited by in F6Publishing: 4] [Article Influence: 2.5] [Reference Citation Analysis]
12 Ashraf U, Benoit-Pilven C, Navratil V, Ligneau C, Fournier G, Munier S, Sismeiro O, Coppée JY, Lacroix V, Naffakh N. Influenza virus infection induces widespread alterations of host cell splicing. NAR Genom Bioinform 2020;2:lqaa095. [PMID: 33575639 DOI: 10.1093/nargab/lqaa095] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
13 Nazarie FW, Shih B, Angus T, Barnett MW, Chen SH, Summers KM, Klein K, Faulkner GJ, Saini HK, Watson M, Dongen SV, Enright AJ, Freeman TC. Visualization and analysis of RNA-Seq assembly graphs. Nucleic Acids Res 2019;47:7262-75. [PMID: 31305886 DOI: 10.1093/nar/gkz599] [Cited by in Crossref: 1] [Article Influence: 0.3] [Reference Citation Analysis]
14 Manet E, Polvèche H, Mure F, Mrozek-Gorska P, Roisné-Hamelin F, Hammerschmidt W, Auboeuf D, Gruffat H. Modulation of alternative splicing during early infection of human primary B lymphocytes with Epstein-Barr virus (EBV): a novel function for the viral EBNA-LP protein. Nucleic Acids Res 2021;49:10657-76. [PMID: 34530456 DOI: 10.1093/nar/gkab787] [Reference Citation Analysis]
15 Acuña V, Grossi R, Italiano GF, Lima L, Rizzi R, Sacomoto G, Sagot M, Sinaimeri B. On Bubble Generators in Directed Graphs. Algorithmica 2020;82:898-914. [DOI: 10.1007/s00453-019-00619-z] [Reference Citation Analysis]
16 Fontrodona N, Aubé F, Claude JB, Polvèche H, Lemaire S, Tranchevent LC, Modolo L, Mortreux F, Bourgeois CF, Auboeuf D. Interplay between coding and exonic splicing regulatory sequences. Genome Res 2019;29:711-22. [PMID: 30962178 DOI: 10.1101/gr.241315.118] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 2.0] [Reference Citation Analysis]
17 Jiang W, Chen L. Alternative splicing: Human disease and quantitative analysis from high-throughput sequencing. Comput Struct Biotechnol J 2021;19:183-95. [PMID: 33425250 DOI: 10.1016/j.csbj.2020.12.009] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 2.0] [Reference Citation Analysis]