BPG is committed to discovery and dissemination of knowledge
Cited by in F6Publishing
For: Xue W, Fu T, Deng S, Yang F, Yang J, Zhu F. Molecular Mechanism for the Allosteric Inhibition of the Human Serotonin Transporter by Antidepressant Escitalopram. ACS Chem Neurosci 2022;13:340-51. [PMID: 35041375 DOI: 10.1021/acschemneuro.1c00694] [Cited by in Crossref: 33] [Cited by in F6Publishing: 35] [Article Influence: 33.0] [Reference Citation Analysis]
Number Citing Articles
1 Baidya ATK, Das B, Devi B, Långström B, Ågren H, Darreh-Shori T, Kumar R. Mechanistic Insight into the Inhibition of Choline Acetyltransferase by Proton Pump Inhibitors. ACS Chem Neurosci 2023. [PMID: 36749117 DOI: 10.1021/acschemneuro.2c00738] [Reference Citation Analysis]
2 Liu J, Gao Y, Jin B, Guo D, Deng F, Bian Q, Zhang H, Han X, Ali AS, Zhang M, Zhang W, Gu Y. Design, Synthesis, Antifungal Activity, and Molecular Docking of Streptochlorin Derivatives Containing the Nitrile Group. Marine Drugs 2023;21:103. [DOI: 10.3390/md21020103] [Reference Citation Analysis]
3 Alshabrmi FM, Alatawi EA. Deciphering the mechanism of resistance by novel double mutations in pncA in Mycobacterium tuberculosis using protein structural graphs (PSG) and structural bioinformatic approaches. Comput Biol Med 2023;154:106599. [PMID: 36731361 DOI: 10.1016/j.compbiomed.2023.106599] [Reference Citation Analysis]
4 Yue ZX, Yan TC, Xu HQ, Liu YH, Hong YF, Chen GX, Xie T, Tao L. A systematic review on the state-of-the-art strategies for protein representation. Comput Biol Med 2023;152:106440. [PMID: 36543002 DOI: 10.1016/j.compbiomed.2022.106440] [Reference Citation Analysis]
5 Zhou S, Zou H, Wang Y, Lo GV, Yuan S. Atomic Mechanisms of Transthyretin Tetramer Dissociation Studied by Molecular Dynamics Simulations. J Chem Inf Model 2022;62:6667-78. [PMID: 35993568 DOI: 10.1021/acs.jcim.2c00447] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
6 Yan TC, Yue ZX, Xu HQ, Liu YH, Hong YF, Chen GX, Tao L, Xie T. A systematic review of state-of-the-art strategies for machine learning-based protein function prediction. Comput Biol Med 2022;154:106446. [PMID: 36680931 DOI: 10.1016/j.compbiomed.2022.106446] [Reference Citation Analysis]
7 Chang SN, Keretsu S, Kang SC. Evaluation of decursin and its isomer decursinol angelate as potential inhibitors of human glutamate dehydrogenase activity through in silico and enzymatic assay screening. Comput Biol Med 2022;151:106287. [PMID: 36455296 DOI: 10.1016/j.compbiomed.2022.106287] [Reference Citation Analysis]
8 Yang Q, Li B, Wang P, Xie J, Feng Y, Liu Z, Zhu F. LargeMetabo: an out-of-the-box tool for processing and analyzing large-scale metabolomic data. Brief Bioinform 2022;23:bbac455. [PMID: 36274234 DOI: 10.1093/bib/bbac455] [Reference Citation Analysis]
9 Eltaib L, Alzain AA. Targeting the omicron variant of SARS-CoV-2 with phytochemicals from Saudi medicinal plants: molecular docking combined with molecular dynamics investigations. Journal of Biomolecular Structure and Dynamics 2022. [DOI: 10.1080/07391102.2022.2146203] [Reference Citation Analysis]
10 Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res 2023;51:D1263-75. [PMID: 36243960 DOI: 10.1093/nar/gkac812] [Cited by in Crossref: 1] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
11 Li F, Yin J, Lu M, Mou M, Li Z, Zeng Z, Tan Y, Wang S, Chu X, Dai H, Hou T, Zeng S, Chen Y, Zhu F. DrugMAP: molecular atlas and pharma-information of all drugs. Nucleic Acids Res 2023;51:D1288-99. [PMID: 36243961 DOI: 10.1093/nar/gkac813] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 2.0] [Reference Citation Analysis]
12 Pitsillou E, Liang JJ, Beh RC, Hung A, Karagiannis TC. Molecular dynamics simulations highlight the altered binding landscape at the spike-ACE2 interface between the Delta and Omicron variants compared to the SARS-CoV-2 original strain. Computers in Biology and Medicine 2022;149:106035. [DOI: 10.1016/j.compbiomed.2022.106035] [Reference Citation Analysis]
13 Huang X, Jiang H, Pei J, Wu Q, Wu W, Ren C, Zhou L, zhou Y, Xian B, Chen C, Yan Y, Lu L, Wang Y, Zhu X. Study on the potential mechanism, therapeutic drugs and prescriptions of insomnia based on bioinformatics and molecular docking. Computers in Biology and Medicine 2022;149:106001. [DOI: 10.1016/j.compbiomed.2022.106001] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
14 Ko M, Kim Y, Kim HH, Jeong S, Ahn D, Chung SJ, Kim H. Network pharmacology and molecular docking approaches to elucidate the potential compounds and targets of Saeng-Ji-Hwang-Ko for treatment of type 2 diabetes mellitus. Computers in Biology and Medicine 2022;149:106041. [DOI: 10.1016/j.compbiomed.2022.106041] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
15 Liu S, Chen L, Zhang Y, Zhou Y, He Y, Chen Z, Qi S, Zhu J, Chen X, Zhang H, Luo Y, Qiu Y, Tao L, Zhu F. M6AREG: m6A-centered regulation of disease development and drug response. Nucleic Acids Res 2023;51:D1333-44. [PMID: 36134713 DOI: 10.1093/nar/gkac801] [Reference Citation Analysis]
16 Yang Q, Li Y, Li B, Gong Y. A novel multi-class classification model for schizophrenia, bipolar disorder and healthy controls using comprehensive transcriptomic data. Comput Biol Med 2022;148:105956. [PMID: 35981456 DOI: 10.1016/j.compbiomed.2022.105956] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
17 Linani A, Serseg T, Benarous K, Bou-Salah L, Yousfi M, Alama MN, Ashraf GM. Cupressus sempervirens L. flavonoids as potent inhibitors to xanthine oxidase: in vitro, molecular docking, ADMET and PASS studies. J Biomol Struct Dyn 2022;:1-14. [PMID: 36001586 DOI: 10.1080/07391102.2022.2114943] [Reference Citation Analysis]
18 Gervasoni S, Malloci G, Bosin A, Vargiu AV, Zgurskaya HI, Ruggerone P. Recognition of quinolone antibiotics by the multidrug efflux transporter MexB of Pseudomonas aeruginosa. Phys Chem Chem Phys 2022;24:16566-75. [PMID: 35766032 DOI: 10.1039/d2cp00951j] [Reference Citation Analysis]
19 Xie J, Chen R, Wang Q, Mao H. Exploration and validation of Taraxacum mongolicum anti-cancer effect. Comput Biol Med 2022;148:105819. [PMID: 35810695 DOI: 10.1016/j.compbiomed.2022.105819] [Reference Citation Analysis]
20 Khan A, Li W, Ambreen A, Wei D, Wang Y, Mao Y. A protein coupling and molecular simulation analysis of the clinical mutants of androgen receptor revealed a higher binding for Leupaxin, to increase the prostate cancer invasion and motility. Computers in Biology and Medicine 2022;146:105537. [DOI: 10.1016/j.compbiomed.2022.105537] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
21 Shafiq A, Zubair F, Ambreen A, Suleman M, Yousafi Q, Rasul Niazi Z, Anwar Z, Khan A, Mohammad A, Wei DQ. Investigation of the binding and dynamic features of A.30 variant revealed higher binding of RBD for hACE2 and escapes the neutralizing antibody: A molecular simulation approach. Comput Biol Med 2022;146:105574. [PMID: 35533461 DOI: 10.1016/j.compbiomed.2022.105574] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
22 Singh R, Bhardwaj VK, Das P, Bhattacherjee D, Zyryanov GV, Purohit R. Benchmarking the ability of novel compounds to inhibit SARS-CoV-2 main protease using steered molecular dynamics simulations. Comput Biol Med 2022;146:105572. [PMID: 35551011 DOI: 10.1016/j.compbiomed.2022.105572] [Cited by in Crossref: 11] [Cited by in F6Publishing: 11] [Article Influence: 11.0] [Reference Citation Analysis]
23 Aboelnga MM. Exploring the structure function relationship of heme peroxidases: Molecular dynamics study on cytochrome c peroxidase variants. Computers in Biology and Medicine 2022;146:105544. [DOI: 10.1016/j.compbiomed.2022.105544] [Reference Citation Analysis]
24 Lee S, Wong AR, Yang AWH, Hung A. Interaction of compounds derived from the Chinese medicinal formula Huangqi Guizhi Wuwu Tang with stroke-related numbness and weakness targets: An in-silico docking and molecular dynamics study. Computers in Biology and Medicine 2022;146:105568. [DOI: 10.1016/j.compbiomed.2022.105568] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
25 Zahid S, Gul M, Shafique S, Rashid S. E2(UbcH5B)-derived peptide ligands target HECT E3-E2 binding site and block the Ub-dependent SARS-CoV-2 egression: A computational study. Comput Biol Med 2022;146:105660. [PMID: 35751189 DOI: 10.1016/j.compbiomed.2022.105660] [Reference Citation Analysis]
26 Li F, Yin J, Lu M, Yang Q, Zeng Z, Zhang B, Li Z, Qiu Y, Dai H, Chen Y, Zhu F. ConSIG: consistent discovery of molecular signature from OMIC data. Brief Bioinform 2022:bbac253. [PMID: 35758241 DOI: 10.1093/bib/bbac253] [Cited by in Crossref: 7] [Cited by in F6Publishing: 7] [Article Influence: 7.0] [Reference Citation Analysis]
27 Shi N, Zheng Q, Zhang H. Molecular Basis of the Recognition of Cholesterol by Cytochrome P450 46A1 along the Major Access Tunnel. ACS Chem Neurosci 2022;13:1526-33. [PMID: 35438962 DOI: 10.1021/acschemneuro.1c00866] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
28 Dwivedi M, Mukhopadhyay S, Yadav S, Dubey KD. A multidrug efflux protein in Mycobacterium tuberculosis; tap as a potential drug target for drug repurposing. Comput Biol Med 2022;146:105607. [PMID: 35617724 DOI: 10.1016/j.compbiomed.2022.105607] [Reference Citation Analysis]
29 Zhang C, Mou M, Zhou Y, Zhang W, Lian X, Shi S, Lu M, Sun H, Li F, Wang Y, Zeng Z, Li Z, Zhang B, Qiu Y, Zhu F, Gao J. Biological activities of drug inactive ingredients. Brief Bioinform 2022:bbac160. [PMID: 35524477 DOI: 10.1093/bib/bbac160] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
30 Islas ÁA, Scior T. Allosteric Binding of MDMA to the Human Serotonin Transporter (hSERT) via Ensemble Binding Space Analysis with ΔG Calculations, Induced Fit Docking and Monte Carlo Simulations. Molecules 2022;27:2977. [PMID: 35566327 DOI: 10.3390/molecules27092977] [Reference Citation Analysis]
31 Yousaf R, Navid A, Azam SS. Discovery of novel Glutaminase allosteric inhibitors through drug repurposing and comparative MMGB/PBSA and molecular dynamics simulation. Computers in Biology and Medicine 2022. [DOI: 10.1016/j.compbiomed.2022.105669] [Reference Citation Analysis]
32 Khanal P, Patil VS, Bhandare VV, Dwivedi PS, Shastry C, Patil B, Gurav SS, Harish DR, Roy S. Computational investigation of benzalacetophenone derivatives against SARS-CoV-2 as potential multi-target bioactive compounds. Computers in Biology and Medicine 2022. [DOI: 10.1016/j.compbiomed.2022.105668] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
33 Xia W, Zheng L, Fang J, Li F, Zhou Y, Zeng Z, Zhang B, Li Z, Li H, Zhu F. PFmulDL: a novel strategy enabling multi-class and multi-label protein function annotation by integrating diverse deep learning methods. Comput Biol Med 2022;145:105465. [PMID: 35366467 DOI: 10.1016/j.compbiomed.2022.105465] [Cited by in Crossref: 12] [Cited by in F6Publishing: 14] [Article Influence: 12.0] [Reference Citation Analysis]
34 Wang Y, Qin D, Jin L, Liang G. Caffeoyl malic acid is a potential dual inhibitor targeting TNFα/IL-4 evaluated by a combination strategy of network analysis-deep learning-molecular simulation. Comput Biol Med 2022;145:105410. [PMID: 35325732 DOI: 10.1016/j.compbiomed.2022.105410] [Reference Citation Analysis]
35 Xu D, Zheng QC. Theoretical investigations on the effects of mutations in important residues of NS1B on its RNA-binding using molecular dynamics simulations. Comput Biol Med 2022;145:105412. [PMID: 35344866 DOI: 10.1016/j.compbiomed.2022.105412] [Reference Citation Analysis]
36 Magalhães RP, Vieira TF, Melo A, Sousa SF. Identification of novel candidates for inhibition of LasR , a quorum-sensing receptor of multidrug resistant Pseudomonas aeruginosa , through a specialized multi-level in silico approach. Mol Syst Des Eng . [DOI: 10.1039/d2me00009a] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 2.0] [Reference Citation Analysis]