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For: Ratmann O, Kagaayi J, Hall M, Golubchick T, Kigozi G, Xi X, Wymant C, Nakigozi G, Abeler-Dörner L, Bonsall D, Gall A, Hoppe A, Kellam P, Bazaale J, Kalibbala S, Laeyendecker O, Lessler J, Nalugoda F, Chang LW, de Oliveira T, Pillay D, Quinn TC, Reynolds SJ, Spencer SEF, Ssekubugu R, Serwadda D, Wawer MJ, Gray RH, Fraser C, Grabowski MK; Rakai Health Sciences Program and the Pangea HIV Consortium. Quantifying HIV transmission flow between high-prevalence hotspots and surrounding communities: a population-based study in Rakai, Uganda. Lancet HIV 2020;7:e173-83. [PMID: 31953184 DOI: 10.1016/S2352-3018(19)30378-9] [Cited by in Crossref: 32] [Cited by in F6Publishing: 36] [Article Influence: 16.0] [Reference Citation Analysis]
Number Citing Articles
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4 Villabona-arenas CJ, Hué S, Baxter JAC, Hall M, Lythgoe KA, Bradley J, Atkins KE. Using phylogenetics to infer HIV-1 transmission direction between known transmission pairs. Proc Natl Acad Sci U S A 2022;119:e2210604119. [DOI: 10.1073/pnas.2210604119] [Reference Citation Analysis]
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6 Kremer C, Kamali A, Kuteesa M, Seeley J, Hens N, Nsubuga RN. Modelling the impact of combining HIV prevention interventions on HIV dynamics in fishing communities in Uganda.. [DOI: 10.1101/2022.05.20.22275218] [Reference Citation Analysis]
7 Xi X, Spencer SEF, Hall M, Grabowski MK, Kagaayi J, Ratmann O; Rakai Health Sciences Program and PANGEA‐HIV. Inferring the sources of HIV infection in Africa from deep‐sequence data with semi‐parametric Bayesian Poisson flow models. Royal Stata Society Series C. [DOI: 10.1111/rssc.12544] [Reference Citation Analysis]
8 Cuadros DF, de Oliveira T, Gräf T, Junqueira DM, Wilkinson E, Lemey P, Bärnighausen T, Kim H, Tanser F. The role of high-risk geographies in the perpetuation of the HIV epidemic in rural South Africa: A spatial molecular epidemiology study. PLOS Glob Public Health 2022;2:e0000105. [DOI: 10.1371/journal.pgph.0000105] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
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10 Yuan D, Yu B, Liang S, Fei T, Tang H, Kang R, Li Y, Ye L, Jia P, Yang S. HIV-1 genetic transmission networks among people living with HIV/AIDS in Sichuan, China: a genomic and spatial epidemiological analysis. Lancet Reg Health West Pac 2022;18:100318. [PMID: 35024655 DOI: 10.1016/j.lanwpc.2021.100318] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
11 Xiang W, Chen L, Wang B, Xue Q, Hao W, Liu X. Policies, population and impacts in metro ridership response to COVID-19 in Changsha. Journal of Transportation Safety & Security. [DOI: 10.1080/19439962.2021.2005727] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 2.0] [Reference Citation Analysis]
12 Zhou C, Kang R, Liang S, Fei T, Li Y, Su L, Li L, Ye L, Zhang Y, Yuan D. Risk Factors of Drug Resistance and the Potential Risk of HIV-1 Transmission of Patients with ART Virological Failure: A Population-Based Study in Sichuan, China. Infect Drug Resist 2021;14:5219-33. [PMID: 34908855 DOI: 10.2147/IDR.S334598] [Reference Citation Analysis]
13 An M, Zheng C, Li H, Chen L, Yang Z, Gan Y, Han X, Zhao J, Shang H. Independent epidemic patterns of HIV-1 CRF01_AE lineages driven by mobile population in Shenzhen, an immigrant city of China. Virus Evolution 2021;7:veab094. [DOI: 10.1093/ve/veab094] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
14 Hall M, Golubchik T, Bonsall D, Abeler-dörner L, Limbada M, Kosloff B, Schaap A, de Cesare M, Mackintyre-cockett G, Probert W, Ratmann O, Cruz AB, Piwowar-manning E, Burns DN, Cohen MS, Donnell DJ, Eshleman SH, Simwinga M, Hayes R, Fidler S, Ayles H, Fraser C. Demographic characteristics of sources of HIV-1 transmission in Zambia.. [DOI: 10.1101/2021.10.04.21263560] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
15 Wohl S, Giles JR, Lessler J. Sample size calculation for phylogenetic case linkage. PLoS Comput Biol 2021;17:e1009182. [PMID: 34228722 DOI: 10.1371/journal.pcbi.1009182] [Cited by in Crossref: 4] [Cited by in F6Publishing: 5] [Article Influence: 4.0] [Reference Citation Analysis]
16 Garnett GP. Reductions in HIV incidence are likely to increase the importance of key population programmes for HIV control in sub-Saharan Africa. J Int AIDS Soc 2021;24 Suppl 3:e25727. [PMID: 34189844 DOI: 10.1002/jia2.25727] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
17 Magosi LE, Zhang Y, Golubchik T, De Gruttola V, Tchetgen ET, Novitsky V, Moore J, Bachanas P, Segolodi T, Lebelonyane R, Holme MP, Moyo S, Makhema J, Lockman S, Fraser C, Essex M, Lipsitch M. Deep-sequence phylogenetics to quantify patterns of HIV transmission in the context of a universal testing and treatment trial – BCPP/ Ya Tsie trial.. [DOI: 10.1101/2021.06.19.21259186] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
18 Nduva GM, Nazziwa J, Hassan AS, Sanders EJ, Esbjörnsson J. The Role of Phylogenetics in Discerning HIV-1 Mixing among Vulnerable Populations and Geographic Regions in Sub-Saharan Africa: A Systematic Review. Viruses 2021;13:1174. [PMID: 34205246 DOI: 10.3390/v13061174] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 4.0] [Reference Citation Analysis]
19 Bbosa N, Ssemwanga D, Nsubuga RN, Kiwanuka N, Bagaya BS, Kitayimbwa JM, Ssekagiri A, Yebra G, Kaleebu P, Leigh-Brown A. Phylogenetic Networks and Parameters Inferred from HIV Nucleotide Sequences of High-Risk and General Population Groups in Uganda: Implications for Epidemic Control. Viruses 2021;13:970. [PMID: 34073846 DOI: 10.3390/v13060970] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 3.0] [Reference Citation Analysis]
20 Villabona-arenas CJ, Hué S, Baxter JAC, Hall M, Lythgoe KA, Bradley J, Atkins KE. USING PHYLOGENETICS TO INFER HIV-1 TRANSMISSION DIRECTION BETWEEN KNOWN TRANSMISSION PAIRS.. [DOI: 10.1101/2021.05.12.21256968] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
21 Valdano E, Okano JT, Colizza V, Mitonga HK, Blower S. Using mobile phone data to reveal risk flow networks underlying the HIV epidemic in Namibia. Nat Commun 2021;12:2837. [PMID: 33990578 DOI: 10.1038/s41467-021-23051-w] [Cited by in Crossref: 3] [Cited by in F6Publishing: 4] [Article Influence: 3.0] [Reference Citation Analysis]
22 Dawson L, Benbow N, Fletcher FE, Kassaye S, Killelea A, Latham SR, Lee LM, Leitner T, Little SJ, Mehta SR, Martinez O, Minalga B, Poon A, Rennie S, Sugarman J, Sweeney P, Torian LV, Wertheim JO. Addressing Ethical Challenges in US-Based HIV Phylogenetic Research. J Infect Dis 2020;222:1997-2006. [PMID: 32525980 DOI: 10.1093/infdis/jiaa107] [Cited by in Crossref: 26] [Cited by in F6Publishing: 26] [Article Influence: 26.0] [Reference Citation Analysis]
23 Ssemwanga D, Bbosa N, Nsubuga RN, Ssekagiri A, Kapaata A, Nannyonjo M, Nassolo F, Karabarinde A, Mugisha J, Seeley J, Yebra G, Leigh Brown A, Kaleebu P. The Molecular Epidemiology and Transmission Dynamics of HIV Type 1 in a General Population Cohort in Uganda. Viruses 2020;12:E1283. [PMID: 33182587 DOI: 10.3390/v12111283] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
24 Novitsky V, Steingrimsson JA, Howison M, Gillani FS, Li Y, Manne A, Fulton J, Spence M, Parillo Z, Marak T, Chan PA, Bertrand T, Bandy U, Alexander-Scott N, Dunn CW, Hogan J, Kantor R. Empirical comparison of analytical approaches for identifying molecular HIV-1 clusters. Sci Rep 2020;10:18547. [PMID: 33122765 DOI: 10.1038/s41598-020-75560-1] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 3.0] [Reference Citation Analysis]
25 Matovu JKB, Nambuusi A, Nakabirye S, Wanyenze RK, Serwadda D. Formative research to inform the development of a peer-led HIV self-testing intervention to improve HIV testing uptake and linkage to HIV care among adolescents, young people and adult men in Kasensero fishing community, Rakai, Uganda: a qualitative study. BMC Public Health 2020;20:1582. [PMID: 33081735 DOI: 10.1186/s12889-020-09714-1] [Cited by in Crossref: 7] [Cited by in F6Publishing: 8] [Article Influence: 3.5] [Reference Citation Analysis]
26 Ssetaala A, Nabawanuka J, Matovu G, Nakiragga N, Namugga J, Nalubega P, Kaluuma HL, Chinyenze K, Perehudoff K, Michielsen K, Bagaya B, Price M, Kiwanuka N, Degomme O. Components of antenatal care received by women in fishing communities on Lake Victoria, Uganda; a cross sectional survey. BMC Health Serv Res 2020;20:901. [PMID: 32993644 DOI: 10.1186/s12913-020-05739-9] [Cited by in Crossref: 3] [Cited by in F6Publishing: 4] [Article Influence: 1.5] [Reference Citation Analysis]
27 Wohl S, Giles JR, Lessler J. Sample Size Calculation for Phylogenetic Case Linkage.. [DOI: 10.1101/2020.07.10.20150920] [Reference Citation Analysis]
28 Bbosa N, Ssemwanga D, Ssekagiri A, Xi X, Mayanja Y, Bahemuka U, Seeley J, Pillay D, Abeler-Dörner L, Golubchik T, Fraser C, Kaleebu P, Ratmann O. Phylogenetic and Demographic Characterization of Directed HIV-1 Transmission Using Deep Sequences from High-Risk and General Population Cohorts/Groups in Uganda. Viruses 2020;12:E331. [PMID: 32197553 DOI: 10.3390/v12030331] [Cited by in Crossref: 12] [Cited by in F6Publishing: 12] [Article Influence: 6.0] [Reference Citation Analysis]
29 Cassels S. Time, population mobility, and HIV transmission. Lancet HIV 2020;7:e151-2. [PMID: 31953185 DOI: 10.1016/S2352-3018(19)30413-8] [Cited by in Crossref: 10] [Cited by in F6Publishing: 13] [Article Influence: 5.0] [Reference Citation Analysis]