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For: Komarova NL, Sengupta A, Nowak MA. Mutation–selection networks of cancer initiation: tumor suppressor genes and chromosomal instability. Journal of Theoretical Biology 2003;223:433-50. [DOI: 10.1016/s0022-5193(03)00120-6] [Cited by in Crossref: 141] [Cited by in F6Publishing: 60] [Article Influence: 7.4] [Reference Citation Analysis]
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2 Wodarz D, Levy DN, Komarova NL. Multiple infection of cells changes the dynamics of basic viral evolutionary processes. Evol Lett 2019;3:104-15. [PMID: 30788146 DOI: 10.1002/evl3.95] [Cited by in Crossref: 4] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
3 Komarova NL, Sadovsky AV, Wan FY. Selective pressures for and against genetic instability in cancer: a time-dependent problem. J R Soc Interface 2008;5:105-21. [PMID: 17580291 DOI: 10.1098/rsif.2007.1054] [Cited by in Crossref: 15] [Cited by in F6Publishing: 14] [Article Influence: 1.1] [Reference Citation Analysis]
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7 Komarova NL, Shahriyari L, Wodarz D. Complex role of space in the crossing of fitness valleys by asexual populations. J R Soc Interface 2014;11:20140014. [PMID: 24671934 DOI: 10.1098/rsif.2014.0014] [Cited by in Crossref: 26] [Cited by in F6Publishing: 20] [Article Influence: 3.3] [Reference Citation Analysis]
8 Shahriyari L, Komarova NL. Symmetric vs. asymmetric stem cell divisions: an adaptation against cancer? PLoS One 2013;8:e76195. [PMID: 24204602 DOI: 10.1371/journal.pone.0076195] [Cited by in Crossref: 72] [Cited by in F6Publishing: 61] [Article Influence: 8.0] [Reference Citation Analysis]
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10 Wan FYM, Sadovsky AV, Komarova NL. Genetic Instability in Cancer: An Optimal Control Problem. Studies in Applied Mathematics 2010. [DOI: 10.1111/j.1467-9590.2009.00476.x] [Cited by in Crossref: 1] [Article Influence: 0.1] [Reference Citation Analysis]
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15 Nowak MA, Michor F, Komarova NL, Iwasa Y. Evolutionary dynamics of tumor suppressor gene inactivation. Proc Natl Acad Sci U S A 2004;101:10635-8. [PMID: 15252197 DOI: 10.1073/pnas.0400747101] [Cited by in Crossref: 74] [Cited by in F6Publishing: 61] [Article Influence: 4.1] [Reference Citation Analysis]
16 Van Egeren D, Madsen T, Michor F. Fitness variation in isogenic populations leads to a novel evolutionary mechanism for crossing fitness valleys. Commun Biol 2018;1:151. [PMID: 30272027 DOI: 10.1038/s42003-018-0160-1] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 0.8] [Reference Citation Analysis]
17 Iwasa Y, Michor F, Nowak MA. Stochastic tunnels in evolutionary dynamics. Genetics 2004;166:1571-9. [PMID: 15082570 DOI: 10.1534/genetics.166.3.1571] [Cited by in Crossref: 188] [Cited by in F6Publishing: 137] [Article Influence: 10.4] [Reference Citation Analysis]
18 Foo J, Leder K, Michor F. Stochastic dynamics of cancer initiation. Phys Biol 2011;8:015002. [PMID: 21301064 DOI: 10.1088/1478-3975/8/1/015002] [Cited by in Crossref: 34] [Cited by in F6Publishing: 27] [Article Influence: 3.1] [Reference Citation Analysis]
19 Richter H. Spectral analysis of transient amplifiers for death-birth updating constructed from regular graphs. J Math Biol 2021;82:61. [PMID: 33993365 DOI: 10.1007/s00285-021-01609-y] [Reference Citation Analysis]
20 Sanchez-Tapia C, Wan FY. Fastest time to cancer by loss of tumor suppressor genes. Bull Math Biol 2014;76:2737-84. [PMID: 25338553 DOI: 10.1007/s11538-014-0027-7] [Cited by in Crossref: 4] [Cited by in F6Publishing: 5] [Article Influence: 0.5] [Reference Citation Analysis]
21 Gerlee P, Anderson AR. Evolution of cell motility in an individual-based model of tumour growth. J Theor Biol 2009;259:67-83. [PMID: 19285513 DOI: 10.1016/j.jtbi.2009.03.005] [Cited by in Crossref: 48] [Cited by in F6Publishing: 40] [Article Influence: 3.7] [Reference Citation Analysis]
22 De Matteis G, Graudenzi A, Antoniotti M. A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development. J Math Biol 2013;66:1409-62. [PMID: 22565629 DOI: 10.1007/s00285-012-0539-4] [Cited by in Crossref: 38] [Cited by in F6Publishing: 1] [Article Influence: 3.8] [Reference Citation Analysis]
23 Pavel AB, Korolev KS. Genetic load makes cancer cells more sensitive to common drugs: evidence from Cancer Cell Line Encyclopedia. Sci Rep 2017;7:1938. [PMID: 28512298 DOI: 10.1038/s41598-017-02178-1] [Cited by in Crossref: 5] [Cited by in F6Publishing: 4] [Article Influence: 1.0] [Reference Citation Analysis]
24 Lynch M. Scaling expectations for the time to establishment of complex adaptations. Proc Natl Acad Sci U S A 2010;107:16577-82. [PMID: 20823237 DOI: 10.1073/pnas.1010836107] [Cited by in Crossref: 42] [Cited by in F6Publishing: 33] [Article Influence: 3.5] [Reference Citation Analysis]
25 Buder T, Deutsch A, Seifert M, Voss-Böhme A. CellTrans: An R Package to Quantify Stochastic Cell State Transitions. Bioinform Biol Insights 2017;11:1177932217712241. [PMID: 28659714 DOI: 10.1177/1177932217712241] [Cited by in Crossref: 8] [Cited by in F6Publishing: 5] [Article Influence: 1.6] [Reference Citation Analysis]
26 Rodriguez-Brenes IA, Komarova NL, Wodarz D. The role of telomere shortening in carcinogenesis: A hybrid stochastic-deterministic approach. J Theor Biol 2019;460:144-52. [PMID: 30315815 DOI: 10.1016/j.jtbi.2018.09.003] [Cited by in Crossref: 4] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
27 Komarova NL. Spatial interactions and cooperation can change the speed of evolution of complex phenotypes. Proc Natl Acad Sci U S A 2014;111 Suppl 3:10789-95. [PMID: 25024187 DOI: 10.1073/pnas.1400828111] [Cited by in Crossref: 32] [Cited by in F6Publishing: 16] [Article Influence: 4.0] [Reference Citation Analysis]
28 Michor F, Iwasa Y, Nowak MA. The age incidence of chronic myeloid leukemia can be explained by a one-mutation model. Proc Natl Acad Sci U S A 2006;103:14931-4. [PMID: 17001000 DOI: 10.1073/pnas.0607006103] [Cited by in Crossref: 57] [Cited by in F6Publishing: 51] [Article Influence: 3.6] [Reference Citation Analysis]
29 Thalhauser CJ, Lowengrub JS, Stupack D, Komarova NL. Selection in spatial stochastic models of cancer: migration as a key modulator of fitness. Biol Direct 2010;5:21. [PMID: 20406439 DOI: 10.1186/1745-6150-5-21] [Cited by in Crossref: 25] [Cited by in F6Publishing: 21] [Article Influence: 2.1] [Reference Citation Analysis]
30 Bollas A, Shahriyari L. The role of backward cell migration in two-hit mutants' production in the stem cell niche. PLoS One 2017;12:e0184651. [PMID: 28931019 DOI: 10.1371/journal.pone.0184651] [Cited by in Crossref: 4] [Cited by in F6Publishing: 4] [Article Influence: 0.8] [Reference Citation Analysis]
31 Fonville JM. Expected Effect of Deleterious Mutations on Within-Host Adaptation of Pathogens. J Virol 2015;89:9242-51. [PMID: 26109724 DOI: 10.1128/JVI.00832-15] [Cited by in Crossref: 7] [Cited by in F6Publishing: 6] [Article Influence: 1.0] [Reference Citation Analysis]
32 Beckman RA, Loeb LA. Negative clonal selection in tumor evolution. Genetics 2005;171:2123-31. [PMID: 16143627 DOI: 10.1534/genetics.105.040840] [Cited by in Crossref: 35] [Cited by in F6Publishing: 33] [Article Influence: 2.1] [Reference Citation Analysis]
33 Nowak MA, Michor F, Iwasa Y. Genetic instability and clonal expansion. J Theor Biol 2006;241:26-32. [PMID: 16405914 DOI: 10.1016/j.jtbi.2005.11.012] [Cited by in Crossref: 24] [Cited by in F6Publishing: 22] [Article Influence: 1.5] [Reference Citation Analysis]
34 Vahdati AR, Sprouffske K, Wagner A. Effect of Population Size and Mutation Rate on the Evolution of RNA Sequences on an Adaptive Landscape Determined by RNA Folding. Int J Biol Sci 2017;13:1138-51. [PMID: 29104505 DOI: 10.7150/ijbs.19436] [Cited by in Crossref: 5] [Cited by in F6Publishing: 3] [Article Influence: 1.0] [Reference Citation Analysis]
35 Lynch M. The evolution of multimeric protein assemblages. Mol Biol Evol 2012;29:1353-66. [PMID: 22144639 DOI: 10.1093/molbev/msr300] [Cited by in Crossref: 53] [Cited by in F6Publishing: 45] [Article Influence: 4.8] [Reference Citation Analysis]
36 De Matteis G, Graudenzi A, Antoniotti M. A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development. J Math Biol 2013;66:1409-62. [PMID: 22565629 DOI: 10.1007/s00285-012-0539-4] [Cited by in Crossref: 38] [Cited by in F6Publishing: 22] [Article Influence: 3.8] [Reference Citation Analysis]
37 Desper R, Difilippantonio MJ, Ried T, Schäffer AA. A comprehensive continuous-time model for the appearance of CGH signal due to chromosomal missegregations during mitosis. Math Biosci 2005;197:67-87. [PMID: 16043196 DOI: 10.1016/j.mbs.2005.05.005] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.1] [Reference Citation Analysis]
38 Buder T, Deutsch A, Klink B, Voss-Böhme A. Model-Based Evaluation of Spontaneous Tumor Regression in Pilocytic Astrocytoma. PLoS Comput Biol 2015;11:e1004662. [PMID: 26658166 DOI: 10.1371/journal.pcbi.1004662] [Cited by in Crossref: 14] [Cited by in F6Publishing: 8] [Article Influence: 2.0] [Reference Citation Analysis]
39 Bellouquid A. From systems biology to analytic problems: comment on the paper "On the interplay between mathematics and biology, hallmarks toward a new systems biology" by N. Bellomo et al. Phys Life Rev 2015;12:68-9. [PMID: 25618396 DOI: 10.1016/j.plrev.2015.01.005] [Cited by in Crossref: 1] [Article Influence: 0.1] [Reference Citation Analysis]
40 Weissman DB, Feldman MW, Fisher DS. The rate of fitness-valley crossing in sexual populations. Genetics 2010;186:1389-410. [PMID: 20923976 DOI: 10.1534/genetics.110.123240] [Cited by in Crossref: 64] [Cited by in F6Publishing: 47] [Article Influence: 5.3] [Reference Citation Analysis]
41 Wodarz D, Newell AC, Komarova NL. Passenger mutations can accelerate tumour suppressor gene inactivation in cancer evolution. J R Soc Interface 2018;15:20170967. [PMID: 29875280 DOI: 10.1098/rsif.2017.0967] [Cited by in Crossref: 8] [Cited by in F6Publishing: 7] [Article Influence: 2.7] [Reference Citation Analysis]
42 Obolski U, Lewin-Epstein O, Even-Tov E, Ram Y, Hadany L. With a little help from my friends: cooperation can accelerate the rate of adaptive valley crossing. BMC Evol Biol 2017;17:143. [PMID: 28623896 DOI: 10.1186/s12862-017-0983-2] [Cited by in Crossref: 6] [Cited by in F6Publishing: 3] [Article Influence: 1.2] [Reference Citation Analysis]
43 Gatenby RA, Cunningham JJ, Brown JS. Evolutionary triage governs fitness in driver and passenger mutations and suggests targeting never mutations. Nat Commun 2014;5:5499. [PMID: 25407411 DOI: 10.1038/ncomms6499] [Cited by in Crossref: 55] [Cited by in F6Publishing: 46] [Article Influence: 6.9] [Reference Citation Analysis]
44 Teimouri H, Kolomeisky AB. Temporal order of mutations influences cancer initiation dynamics. Phys Biol 2021;18. [PMID: 34130273 DOI: 10.1088/1478-3975/ac0b7e] [Reference Citation Analysis]
45 Zhao R, Michor F. Patterns of proliferative activity in the colonic crypt determine crypt stability and rates of somatic evolution. PLoS Comput Biol. 2013;9:e1003082. [PMID: 23785264 DOI: 10.1371/journal.pcbi.1003082] [Cited by in Crossref: 17] [Cited by in F6Publishing: 16] [Article Influence: 1.9] [Reference Citation Analysis]
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48 Alcalde Cuesta F, González Sequeiros P, Lozano Rojo Á. Suppressors of selection. PLoS One 2017;12:e0180549. [PMID: 28700698 DOI: 10.1371/journal.pone.0180549] [Cited by in Crossref: 10] [Cited by in F6Publishing: 7] [Article Influence: 2.0] [Reference Citation Analysis]
49 Foo J, Leder K, Schweinsberg J. Mutation timing in a spatial model of evolution. Stochastic Processes and their Applications 2020;130:6388-413. [DOI: 10.1016/j.spa.2020.05.015] [Cited by in Crossref: 1] [Article Influence: 0.5] [Reference Citation Analysis]
50 Trotter MV, Weissman DB, Peterson GI, Peck KM, Masel J. Cryptic genetic variation can make "irreducible complexity" a common mode of adaptation in sexual populations. Evolution 2014;68:3357-67. [PMID: 25178652 DOI: 10.1111/evo.12517] [Cited by in Crossref: 12] [Cited by in F6Publishing: 5] [Article Influence: 1.5] [Reference Citation Analysis]
51 Wang Y, Boland CR, Goel A, Wodarz D, Komarova NL. Aspirin's effect on kinetic parameters of cells contributes to its role in reducing incidence of advanced colorectal adenomas, shown by a multiscale computational study. Elife 2022;11:e71953. [PMID: 35416770 DOI: 10.7554/eLife.71953] [Reference Citation Analysis]
52 Manem VS, Kohandel M, Komarova NL, Sivaloganathan S. Spatial invasion dynamics on random and unstructured meshes: implications for heterogeneous tumor populations. J Theor Biol 2014;349:66-73. [PMID: 24462897 DOI: 10.1016/j.jtbi.2014.01.009] [Cited by in Crossref: 11] [Cited by in F6Publishing: 9] [Article Influence: 1.4] [Reference Citation Analysis]
53 Ducasse H, Ujvari B, Solary E, Vittecoq M, Arnal A, Bernex F, Pirot N, Misse D, Bonhomme F, Renaud F, Thomas F, Roche B. Can Peto's paradox be used as the null hypothesis to identify the role of evolution in natural resistance to cancer? A critical review. BMC Cancer 2015;15:792. [PMID: 26499116 DOI: 10.1186/s12885-015-1782-z] [Cited by in Crossref: 12] [Cited by in F6Publishing: 9] [Article Influence: 1.7] [Reference Citation Analysis]
54 Manem VS, Kaveh K, Kohandel M, Sivaloganathan S. Modeling Invasion Dynamics with Spatial Random-Fitness Due to Micro-Environment. PLoS One 2015;10:e0140234. [PMID: 26509572 DOI: 10.1371/journal.pone.0140234] [Cited by in Crossref: 15] [Cited by in F6Publishing: 9] [Article Influence: 2.1] [Reference Citation Analysis]
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57 Farhang‐sardroodi S, Komarova NL, Michelen M, Pemantle R. Success probability for selectively neutral invading species in the line model with a random fitness landscape. Studies in Applied Mathematics 2021;146:1023-49. [DOI: 10.1111/sapm.12373] [Reference Citation Analysis]
58 Durrett R, Schmidt D. Waiting for two mutations: with applications to regulatory sequence evolution and the limits of Darwinian evolution. Genetics 2008;180:1501-9. [PMID: 18791261 DOI: 10.1534/genetics.107.082610] [Cited by in Crossref: 52] [Cited by in F6Publishing: 36] [Article Influence: 3.7] [Reference Citation Analysis]
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65 Winkle JJ, Karamched BR, Bennett MR, Ott W, Josić K. Emergent spatiotemporal population dynamics with cell-length control of synthetic microbial consortia. PLoS Comput Biol 2021;17:e1009381. [PMID: 34550968 DOI: 10.1371/journal.pcbi.1009381] [Reference Citation Analysis]
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70 De Vargas Roditi L, Michor F. Evolutionary dynamics of BRCA1 alterations in breast tumorigenesis. J Theor Biol 2011;273:207-15. [PMID: 21194536 DOI: 10.1016/j.jtbi.2010.12.033] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 0.4] [Reference Citation Analysis]
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72 Ashcroft P, Michor F, Galla T. Stochastic tunneling and metastable states during the somatic evolution of cancer. Genetics 2015;199:1213-28. [PMID: 25624316 DOI: 10.1534/genetics.114.171553] [Cited by in Crossref: 10] [Cited by in F6Publishing: 7] [Article Influence: 1.4] [Reference Citation Analysis]