BPG is committed to discovery and dissemination of knowledge
Cited by in F6Publishing
For: Kartha VK, Duarte FM, Hu Y, Ma S, Chew JG, Lareau CA, Earl A, Burkett ZD, Kohlway AS, Lebofsky R, Buenrostro JD. Functional inference of gene regulation using single-cell multi-omics. Cell Genomics 2022;2:100166. [DOI: 10.1016/j.xgen.2022.100166] [Cited by in Crossref: 2] [Cited by in F6Publishing: 4] [Article Influence: 2.0] [Reference Citation Analysis]
Number Citing Articles
1 Zhang D, Deng Y, Kukanja P, Agirre E, Bartosovic M, Dong M, Ma C, Ma S, Su G, Bao S, Liu Y, Xiao Y, Rosoklija GB, Dwork AJ, Mann JJ, Leong KW, Boldrini M, Wang L, Haeussler M, Raphael BJ, Kluger Y, Castelo-Branco G, Fan R. Spatial epigenome-transcriptome co-profiling of mammalian tissues. Nature 2023. [PMID: 36922587 DOI: 10.1038/s41586-023-05795-1] [Reference Citation Analysis]
2 Anderson AG, Rogers BB, Loupe JM, Rodriguez-Nunez I, Roberts SC, White LM, Brazell JN, Bunney WE, Bunney BG, Watson SJ, Cochran JN, Myers RM, Rizzardi LF. Single nucleus multiomics identifies ZEB1 and MAFB as candidate regulators of Alzheimer's disease-specific cis-regulatory elements. Cell Genom 2023;3:100263. [PMID: 36950385 DOI: 10.1016/j.xgen.2023.100263] [Cited by in Crossref: 3] [Article Influence: 3.0] [Reference Citation Analysis]
3 Carbonetto P, Luo K, Sarkar A, Hung A, Tayeb K, Pott S, Stephens M. Interpreting structure in sequence count data with differential expression analysis allowing for grades of membership. bioRxiv 2023:2023. [PMID: 36945441 DOI: 10.1101/2023.03.03.531029] [Reference Citation Analysis]
4 Smits JG, Arts JA, Frölich S, Snabel RR, Heuts BM, Martens JH, van Heeringen SJ, Zhou H. scANANSE gene regulatory network and motif analysis of single-cell clusters. F1000Res 2023;12:243. [DOI: 10.12688/f1000research.130530.1] [Reference Citation Analysis]
5 Lee MYY, Kaestner KH, Li M. Benchmarking algorithms for joint integration of unpaired and paired single-cell RNA-seq and ATAC-seq data. bioRxiv 2023:2023. [PMID: 36778447 DOI: 10.1101/2023.02.01.526609] [Reference Citation Analysis]
6 Li Z, Nagai JS, Kuppe C, Kramann R, Costa IG. scMEGA: single-cell multi-omic enhancer-based gene regulatory network inference. Bioinform Adv 2023;3:vbad003. [PMID: 36698768 DOI: 10.1093/bioadv/vbad003] [Reference Citation Analysis]
7 Kamimoto K, Stringa B, Hoffmann CM, Jindal K, Solnica-Krezel L, Morris SA. Dissecting cell identity via network inference and in silico gene perturbation. Nature 2023;614:742-51. [PMID: 36755098 DOI: 10.1038/s41586-022-05688-9] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
8 Shakola F, Palejev D, Ivanov I. A Framework for Comparison and Assessment of Synthetic RNA-Seq Data. Genes (Basel) 2022;13. [PMID: 36553629 DOI: 10.3390/genes13122362] [Reference Citation Analysis]
9 Chen X, Wang Y, Cappuccio A, Cheng W, Zamojski FR, Nair V, Miller CM, Rubenstein A, Nudelman G, Tadych A, Theesfield C, Vornholt A, George M, Ruffin F, Dagher M, Chawla D, Soares-schanoski A, Spurbeck RR, Ndhlovu LC, Sebra R, Kleinstein S, Letizia AG, Ramos I, Fowler VG, Woods CW, Zaslavsky E, Troyanskaya OG, Sealfon SC. Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data.. [DOI: 10.1101/2022.12.06.22282077] [Reference Citation Analysis]
10 Heimlich JB, Bhat P, Parker AC, Jenkins MT, Vlasschaert C, Ulloa J, Potts CR, Olson S, Silver AJ, Ahmad A, Sharber B, Brown D, Hu N, van Galen P, Savona MR, Bick AG, Ferrell PB. Mutated cells mediate distinct inflammatory responses in clonal hematopoiesis.. [DOI: 10.1101/2022.12.01.518580] [Reference Citation Analysis]
11 Jindal K, Adil MT, Yamaguchi N, Wang HC, Yang X, Kamimoto K, Rivera-gonzalez GC, Morris SA. Multiomic single-cell lineage tracing to dissect fate-specific gene regulatory programs.. [DOI: 10.1101/2022.10.23.512790] [Reference Citation Analysis]
12 Wang H, Keepers B, Qian Y, Xie Y, Colon M, Liu J, Qian L. Cross-lineage potential of Ascl1 uncovered by comparing diverse reprogramming regulatomes. Cell Stem Cell 2022;29:1491-1504.e9. [PMID: 36206732 DOI: 10.1016/j.stem.2022.09.006] [Reference Citation Analysis]
13 Anderson AG, Rogers BB, Loupe JM, Rodriguez-nunez I, Roberts SC, White LM, Brazell JN, Bunney WE, Bunney BG, Watson SJ, Cochran JN, Myers RM, Rizzardi LF. Single nucleus multiomics identifies ZEB1 and MAFB as candidate regulators of Alzheimer’s disease-specific cis regulatory elements.. [DOI: 10.1101/2022.10.04.510636] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
14 Shu H, Ding F, Zhou J, Xue Y, Zhao D, Zeng J, Ma J. Boosting single-cell gene regulatory network reconstruction via bulk-cell transcriptomic data. Brief Bioinform 2022:bbac389. [PMID: 36070863 DOI: 10.1093/bib/bbac389] [Reference Citation Analysis]