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For: Lecuit M, Eloit M. The human virome: new tools and concepts. Trends Microbiol. 2013;21:510-515. [PMID: 23906500 DOI: 10.1016/j.tim.2013.07.001] [Cited by in Crossref: 77] [Cited by in F6Publishing: 59] [Article Influence: 8.6] [Reference Citation Analysis]
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6 Salabura A, Łuniewski A, Kucharska M, Myszak D, Dołęgowska B, Ciechanowski K, Kędzierska-Kapuza K, Wojciuk B. Urinary Tract Virome as an Urgent Target for Metagenomics. Life (Basel) 2021;11:1264. [PMID: 34833140 DOI: 10.3390/life11111264] [Reference Citation Analysis]
7 Rajeoni AH, Ghalyanchilangeroudi A, Khalesi B, Madadi MS, Hosseini H. The tracheal virome of broiler chickens with respiratory disease complex in Iran: the metagenomics study. Iran J Microbiol 2021;13:337-44. [PMID: 34540172 DOI: 10.18502/ijm.v13i3.6396] [Reference Citation Analysis]
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9 Mazur M, Tomczak H, Lodyga M, Czajkowski R, Żaba R, Adamski Z. The microbiome of the human skin and its variability in psoriasis and atopic dermatitis. Postepy Dermatol Alergol 2021;38:205-9. [PMID: 34408590 DOI: 10.5114/ada.2021.106197] [Reference Citation Analysis]
10 Chen Z, Guo Z, Lin H, Tian Y, Zhang P, Chen H, Wang Y, Shen Y. The feasibility of phage therapy for periodontitis. Future Microbiol 2021;16:649-56. [PMID: 34098742 DOI: 10.2217/fmb-2020-0161] [Reference Citation Analysis]
11 Abade Dos Santos FA, Portela SJ, Nogueira T, Carvalho CL, de Sousa R, Duarte MD. Harmless or Threatening? Interpreting the Results of Molecular Diagnosis in the Context of Virus-Host Relationships. Front Microbiol 2021;12:647730. [PMID: 34093464 DOI: 10.3389/fmicb.2021.647730] [Reference Citation Analysis]
12 Ramos EDSF, Rosa UA, Ribeiro GO, Villanova F, Milagres FAP, Brustulin R, Morais VDS, Araújo ELL, Pandey RP, Raj VS, Sabino EC, Deng X, Delwart E, Luchs A, Leal É, da Costa AC. Multiple clades of Husavirus in South America revealed by next generation sequencing. PLoS One 2021;16:e0248486. [PMID: 33755700 DOI: 10.1371/journal.pone.0248486] [Reference Citation Analysis]
13 Rozas M, Hart de Ruijter A, Fabrega MJ, Zorgani A, Guell M, Paetzold B, Brillet F. From Dysbiosis to Healthy Skin: Major Contributions of Cutibacterium acnes to Skin Homeostasis. Microorganisms 2021;9:628. [PMID: 33803499 DOI: 10.3390/microorganisms9030628] [Cited by in Crossref: 2] [Cited by in F6Publishing: 4] [Article Influence: 2.0] [Reference Citation Analysis]
14 Wylie TN, Wylie KM. ViroMatch: A Computational Pipeline for the Detection of Viral Sequences from Complex Metagenomic Data. Microbiol Resour Announc 2021;10:e01468-20. [PMID: 33664143 DOI: 10.1128/MRA.01468-20] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
15 Song K. Classifying the Lifestyle of Metagenomically-Derived Phages Sequences Using Alignment-Free Methods. Front Microbiol 2020;11:567769. [PMID: 33304326 DOI: 10.3389/fmicb.2020.567769] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 1.5] [Reference Citation Analysis]
16 Thijssen M, Tacke F, Beller L, Deboutte W, Yinda KC, Nevens F, Laleman W, Van Ranst M, Pourkarim MR. Clinical relevance of plasma virome dynamics in liver transplant recipients. EBioMedicine 2020;60:103009. [PMID: 32979836 DOI: 10.1016/j.ebiom.2020.103009] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
17 Fernández-Barat L, López-Aladid R, Torres A. Reconsidering ventilator-associated pneumonia from a new dimension of the lung microbiome. EBioMedicine 2020;60:102995. [PMID: 32950001 DOI: 10.1016/j.ebiom.2020.102995] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
18 Duraisamy GS, Bhosale D, Lipenská I, Huvarova I, Růžek D, Windisch MP, Miller AD. Advanced Therapeutics, Vaccinations, and Precision Medicine in the Treatment and Management of Chronic Hepatitis B Viral Infections; Where Are We and Where Are We Going? Viruses 2020;12:E998. [PMID: 32906840 DOI: 10.3390/v12090998] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 2.5] [Reference Citation Analysis]
19 Kostoff RN, Briggs MB, Porter AL, Hernández AF, Abdollahi M, Aschner M, Tsatsakis A. The under-reported role of toxic substance exposures in the COVID-19 pandemic. Food Chem Toxicol 2020;145:111687. [PMID: 32805343 DOI: 10.1016/j.fct.2020.111687] [Cited by in Crossref: 12] [Cited by in F6Publishing: 12] [Article Influence: 6.0] [Reference Citation Analysis]
20 Pérez-Losada M, Arenas M, Galán JC, Bracho MA, Hillung J, García-González N, González-Candelas F. High-throughput sequencing (HTS) for the analysis of viral populations. Infect Genet Evol 2020;80:104208. [PMID: 32001386 DOI: 10.1016/j.meegid.2020.104208] [Cited by in Crossref: 9] [Cited by in F6Publishing: 8] [Article Influence: 4.5] [Reference Citation Analysis]
21 Wojciuk B, Salabura A, Grygorcewicz B, Kędzierska K, Ciechanowski K, Dołęgowska B. Urobiome: In Sickness and in Health. Microorganisms 2019;7:E548. [PMID: 31717688 DOI: 10.3390/microorganisms7110548] [Cited by in Crossref: 11] [Cited by in F6Publishing: 10] [Article Influence: 3.7] [Reference Citation Analysis]
22 Tampuu A, Bzhalava Z, Dillner J, Vicente R. ViraMiner: Deep learning on raw DNA sequences for identifying viral genomes in human samples. PLoS One 2019;14:e0222271. [PMID: 31509583 DOI: 10.1371/journal.pone.0222271] [Cited by in Crossref: 30] [Cited by in F6Publishing: 19] [Article Influence: 10.0] [Reference Citation Analysis]
23 Zuo T, Kamm MA, Colombel JF, Ng SC. Urbanization and the gut microbiota in health and inflammatory bowel disease. Nat Rev Gastroenterol Hepatol. 2018;15:440-452. [PMID: 29670252 DOI: 10.1038/s41575-018-0003-z] [Cited by in Crossref: 116] [Cited by in F6Publishing: 101] [Article Influence: 38.7] [Reference Citation Analysis]
24 Borse SP, Singh DP, Nivsarkar M. Understanding the relevance of herb-drug interaction studies with special focus on interplays: a prerequisite for integrative medicine. Porto Biomed J 2019;4:e15. [PMID: 31595257 DOI: 10.1016/j.pbj.0000000000000015] [Cited by in Crossref: 17] [Cited by in F6Publishing: 14] [Article Influence: 5.7] [Reference Citation Analysis]
25 Bergner LM, Orton RJ, da Silva Filipe A, Shaw AE, Becker DJ, Tello C, Biek R, Streicker DG. Using noninvasive metagenomics to characterize viral communities from wildlife. Mol Ecol Resour 2019;19:128-43. [PMID: 30240114 DOI: 10.1111/1755-0998.12946] [Cited by in Crossref: 27] [Cited by in F6Publishing: 19] [Article Influence: 6.8] [Reference Citation Analysis]
26 Zuo T, Ng SC. The Gut Microbiota in the Pathogenesis and Therapeutics of Inflammatory Bowel Disease. Front Microbiol. 2018;9:2247. [PMID: 30319571 DOI: 10.3389/fmicb.2018.02247] [Cited by in Crossref: 190] [Cited by in F6Publishing: 175] [Article Influence: 47.5] [Reference Citation Analysis]
27 Bzhalava Z, Tampuu A, Bała P, Vicente R, Dillner J. Machine Learning for detection of viral sequences in human metagenomic datasets. BMC Bioinformatics 2018;19:336. [PMID: 30249176 DOI: 10.1186/s12859-018-2340-x] [Cited by in Crossref: 20] [Cited by in F6Publishing: 11] [Article Influence: 5.0] [Reference Citation Analysis]
28 Gallinella G. The clinical use of parvovirus B19 assays: recent advances. Expert Review of Molecular Diagnostics 2018;18:821-32. [DOI: 10.1080/14737159.2018.1503537] [Cited by in Crossref: 12] [Cited by in F6Publishing: 7] [Article Influence: 3.0] [Reference Citation Analysis]
29 Newberry F, Hsieh SY, Wileman T, Carding SR. Does the microbiome and virome contribute to myalgic encephalomyelitis/chronic fatigue syndrome? Clin Sci (Lond) 2018;132:523-42. [PMID: 29523751 DOI: 10.1042/CS20171330] [Cited by in Crossref: 18] [Cited by in F6Publishing: 11] [Article Influence: 4.5] [Reference Citation Analysis]
30 de la Cruz Peña MJ, Martinez-Hernandez F, Garcia-Heredia I, Lluesma Gomez M, Fornas Ò, Martinez-Garcia M. Deciphering the Human Virome with Single-Virus Genomics and Metagenomics. Viruses 2018;10:E113. [PMID: 29509721 DOI: 10.3390/v10030113] [Cited by in Crossref: 18] [Cited by in F6Publishing: 15] [Article Influence: 4.5] [Reference Citation Analysis]
31 Bzhalava Z, Hultin E, Dillner J. Extension of the viral ecology in humans using viral profile hidden Markov models. PLoS One 2018;13:e0190938. [PMID: 29351302 DOI: 10.1371/journal.pone.0190938] [Cited by in Crossref: 16] [Cited by in F6Publishing: 10] [Article Influence: 4.0] [Reference Citation Analysis]
32 Dolja VV, Koonin EV. Metagenomics reshapes the concepts of RNA virus evolution by revealing extensive horizontal virus transfer. Virus Res 2018;244:36-52. [PMID: 29103997 DOI: 10.1016/j.virusres.2017.10.020] [Cited by in Crossref: 99] [Cited by in F6Publishing: 75] [Article Influence: 19.8] [Reference Citation Analysis]
33 Zárate S, Taboada B, Yocupicio-monroy M, Arias CF. Human Virome. Archives of Medical Research 2017;48:701-16. [DOI: 10.1016/j.arcmed.2018.01.005] [Cited by in Crossref: 24] [Cited by in F6Publishing: 16] [Article Influence: 4.8] [Reference Citation Analysis]
34 Bua G, Gallinella G. How does parvovirus B19 DNA achieve lifelong persistence in human cells? Future Virology 2017;12:549-53. [DOI: 10.2217/fvl-2017-0079] [Cited by in Crossref: 7] [Cited by in F6Publishing: 3] [Article Influence: 1.4] [Reference Citation Analysis]
35 Tan SK, Relman DA, Pinsky BA. The Human Virome: Implications for Clinical Practice in Transplantation Medicine. J Clin Microbiol 2017;55:2884-93. [PMID: 28724557 DOI: 10.1128/JCM.00489-17] [Cited by in Crossref: 12] [Cited by in F6Publishing: 2] [Article Influence: 2.4] [Reference Citation Analysis]
36 Kingsley DH. Emerging Foodborne and Agriculture-Related Viruses. Microbiol Spectr 2016;4. [PMID: 27726774 DOI: 10.1128/microbiolspec.PFS-0007-2014] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.6] [Reference Citation Analysis]
37 Baker JL, Bor B, Agnello M, Shi W, He X. Ecology of the Oral Microbiome: Beyond Bacteria. Trends Microbiol 2017;25:362-74. [PMID: 28089325 DOI: 10.1016/j.tim.2016.12.012] [Cited by in Crossref: 84] [Cited by in F6Publishing: 81] [Article Influence: 16.8] [Reference Citation Analysis]
38 Meuris F, Carthagena L, Jaracz-Ros A, Gaudin F, Cutolo P, Deback C, Xue Y, Thierry F, Doorbar J, Bachelerie F. The CXCL12/CXCR4 Signaling Pathway: A New Susceptibility Factor in Human Papillomavirus Pathogenesis. PLoS Pathog 2016;12:e1006039. [PMID: 27918748 DOI: 10.1371/journal.ppat.1006039] [Cited by in Crossref: 16] [Cited by in F6Publishing: 16] [Article Influence: 2.7] [Reference Citation Analysis]
39 Llopis-Giménez A, Maria González R, Millán-Leiva A, Catalá M, Llacer E, Urbaneja A, Herrero S. Novel RNA viruses producing simultaneous covert infections in Ceratitis capitata. Correlations between viral titers and host fitness, and implications for SIT programs. J Invertebr Pathol 2017;143:50-60. [PMID: 27914927 DOI: 10.1016/j.jip.2016.11.014] [Cited by in Crossref: 7] [Cited by in F6Publishing: 4] [Article Influence: 1.2] [Reference Citation Analysis]
40 Parker J, Chen J. Application of next generation sequencing for the detection of human viral pathogens in clinical specimens. J Clin Virol 2017;86:20-6. [PMID: 27902961 DOI: 10.1016/j.jcv.2016.11.010] [Cited by in Crossref: 26] [Cited by in F6Publishing: 18] [Article Influence: 4.3] [Reference Citation Analysis]
41 Amato KR. An introduction to microbiome analysis for human biology applications. Am J Hum Biol 2017;29. [PMID: 27762069 DOI: 10.1002/ajhb.22931] [Cited by in Crossref: 13] [Cited by in F6Publishing: 12] [Article Influence: 2.2] [Reference Citation Analysis]
42 Rani A, Ranjan R, McGee HS, Metwally A, Hajjiri Z, Brennan DC, Finn PW, Perkins DL. A diverse virome in kidney transplant patients contains multiple viral subtypes with distinct polymorphisms. Sci Rep 2016;6:33327. [PMID: 27633952 DOI: 10.1038/srep33327] [Cited by in Crossref: 31] [Cited by in F6Publishing: 30] [Article Influence: 5.2] [Reference Citation Analysis]
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44 Salzberg SL, Breitwieser FP, Kumar A, Hao H, Burger P, Rodriguez FJ, Lim M, Quiñones-Hinojosa A, Gallia GL, Tornheim JA, Melia MT, Sears CL, Pardo CA. Next-generation sequencing in neuropathologic diagnosis of infections of the nervous system. Neurol Neuroimmunol Neuroinflamm 2016;3:e251. [PMID: 27340685 DOI: 10.1212/NXI.0000000000000251] [Cited by in Crossref: 88] [Cited by in F6Publishing: 52] [Article Influence: 14.7] [Reference Citation Analysis]
45 Dupré J, Guttinger S. Viruses as living processes. Stud Hist Philos Biol Biomed Sci 2016;59:109-16. [PMID: 26994935 DOI: 10.1016/j.shpsc.2016.02.010] [Cited by in Crossref: 20] [Cited by in F6Publishing: 14] [Article Influence: 3.3] [Reference Citation Analysis]
46 Jakubowska AK, Murillo R, Carballo A, Williams T, van Lent JW, Caballero P, Herrero S. Iflavirus increases its infectivity and physical stability in association with baculovirus. PeerJ 2016;4:e1687. [PMID: 26966651 DOI: 10.7717/peerj.1687] [Cited by in Crossref: 21] [Cited by in F6Publishing: 18] [Article Influence: 3.5] [Reference Citation Analysis]
47 Christian N, Whitaker BK, Clay K. Microbiomes: unifying animal and plant systems through the lens of community ecology theory. Front Microbiol 2015;6:869. [PMID: 26441846 DOI: 10.3389/fmicb.2015.00869] [Cited by in Crossref: 77] [Cited by in F6Publishing: 58] [Article Influence: 11.0] [Reference Citation Analysis]
48 Datta S, Budhauliya R, Das B, Chatterjee S, Vanlalhmuaka, Veer V. Next-generation sequencing in clinical virology: Discovery of new viruses. World J Virology 2015; 4(3): 265-276 [PMID: 26279987 DOI: 10.5501/wjv.v4.i3.265] [Cited by in CrossRef: 55] [Cited by in F6Publishing: 43] [Article Influence: 7.9] [Reference Citation Analysis]
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50 Foxman B, Martin ET. Use of the Microbiome in the Practice of Epidemiology: A Primer on -Omic Technologies. Am J Epidemiol 2015;182:1-8. [PMID: 26025238 DOI: 10.1093/aje/kwv102] [Cited by in Crossref: 18] [Cited by in F6Publishing: 17] [Article Influence: 2.6] [Reference Citation Analysis]
51 Whitaker BK, Rúa MA, Mitchell CE. Viral pathogen production in a wild grass host driven by host growth and soil nitrogen. New Phytol 2015;207:760-8. [DOI: 10.1111/nph.13369] [Cited by in Crossref: 19] [Cited by in F6Publishing: 14] [Article Influence: 2.7] [Reference Citation Analysis]
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54 Olschewski K, Kämmer E, Stöckel S, Bocklitz T, Deckert-gaudig T, Zell R, Cialla-may D, Weber K, Deckert V, Popp J. A manual and an automatic TERS based virus discrimination. Nanoscale 2015;7:4545-52. [DOI: 10.1039/c4nr07033j] [Cited by in Crossref: 25] [Cited by in F6Publishing: 5] [Article Influence: 3.6] [Reference Citation Analysis]
55 Rosenberg R. Detecting the emergence of novel, zoonotic viruses pathogenic to humans. Cell Mol Life Sci 2015;72:1115-25. [PMID: 25416679 DOI: 10.1007/s00018-014-1785-y] [Cited by in Crossref: 32] [Cited by in F6Publishing: 28] [Article Influence: 4.0] [Reference Citation Analysis]
56 Robinson CM, Pfeiffer JK. Viruses and the Microbiota. Annu Rev Virol 2014;1:55-69. [PMID: 25821837 DOI: 10.1146/annurev-virology-031413-085550] [Cited by in Crossref: 85] [Cited by in F6Publishing: 70] [Article Influence: 10.6] [Reference Citation Analysis]
57 Hamblin SR, White PA, Tanaka MM. Viral niche construction alters hosts and ecosystems at multiple scales. Trends Ecol Evol 2014;29:594-9. [PMID: 25237032 DOI: 10.1016/j.tree.2014.08.005] [Cited by in Crossref: 9] [Cited by in F6Publishing: 6] [Article Influence: 1.1] [Reference Citation Analysis]
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59 Abeles SR, Pride DT. Molecular bases and role of viruses in the human microbiome. J Mol Biol. 2014;426:3892-3906. [PMID: 25020228 DOI: 10.1016/j.jmb.2014.07.002] [Cited by in Crossref: 89] [Cited by in F6Publishing: 66] [Article Influence: 11.1] [Reference Citation Analysis]
60 Petty TJ, Cordey S, Padioleau I, Docquier M, Turin L, Preynat-Seauve O, Zdobnov EM, Kaiser L. Comprehensive human virus screening using high-throughput sequencing with a user-friendly representation of bioinformatics analysis: a pilot study. J Clin Microbiol 2014;52:3351-61. [PMID: 25009045 DOI: 10.1128/JCM.01389-14] [Cited by in Crossref: 50] [Cited by in F6Publishing: 36] [Article Influence: 6.3] [Reference Citation Analysis]
61 Jakubowska AK, D'Angiolo M, González-Martínez RM, Millán-Leiva A, Carballo A, Murillo R, Caballero P, Herrero S. Simultaneous occurrence of covert infections with small RNA viruses in the lepidopteran Spodoptera exigua. J Invertebr Pathol 2014;121:56-63. [PMID: 24997384 DOI: 10.1016/j.jip.2014.06.009] [Cited by in Crossref: 21] [Cited by in F6Publishing: 20] [Article Influence: 2.6] [Reference Citation Analysis]
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63 Wolf M. Is there really such a thing as “one health”? Thinking about a more than human world from the perspective of cultural anthropology. Social Science & Medicine 2015;129:5-11. [DOI: 10.1016/j.socscimed.2014.06.018] [Cited by in Crossref: 29] [Cited by in F6Publishing: 22] [Article Influence: 3.6] [Reference Citation Analysis]
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