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For: Lee H, Zhang Z, Krause HM. Long Noncoding RNAs and Repetitive Elements: Junk or Intimate Evolutionary Partners? Trends Genet 2019;35:892-902. [PMID: 31662190 DOI: 10.1016/j.tig.2019.09.006] [Cited by in Crossref: 31] [Cited by in F6Publishing: 30] [Article Influence: 10.3] [Reference Citation Analysis]
Number Citing Articles
1 Conteduca G, Cangelosi D, Coco S, Malacarne M, Baldo C, Arado A, Pinto R, Testa B, Coviello DA. NSD1 Mutations in Sotos Syndrome Induce Differential Expression of Long Noncoding RNAs, miR646 and Genes Controlling the G2/M Checkpoint. Life (Basel) 2022;12:988. [PMID: 35888078 DOI: 10.3390/life12070988] [Reference Citation Analysis]
2 Long K, Li X, Su D, Zeng S, Li H, Zhang Y, Zhang B, Yang W, Li P, Li X, Wang X, Tang Q, Lu L, Jin L, Ma J, Li M. Exploring high-resolution chromatin interaction changes and functional enhancers of myogenic marker genes during myogenic differentiation. J Biol Chem 2022;:102149. [PMID: 35787372 DOI: 10.1016/j.jbc.2022.102149] [Reference Citation Analysis]
3 Doolittle WF. All about levels: transposable elements as selfish DNAs and drivers of evolution. Biol Philos 2022;37. [DOI: 10.1007/s10539-022-09852-3] [Cited by in Crossref: 1] [Article Influence: 1.0] [Reference Citation Analysis]
4 Berrino E, Miglio U, Bellomo SE, Debernardi C, Bragoni A, Petrelli A, Cascardi E, Giordano S, Montemurro F, Marchiò C, Venesio T, Sapino A. The Tumor-Specific Expression of L1 Retrotransposons Independently Correlates with Time to Relapse in Hormone-Negative Breast Cancer Patients. Cells 2022;11:1944. [PMID: 35741073 DOI: 10.3390/cells11121944] [Reference Citation Analysis]
5 Bugnon LA, Edera AA, Prochetto S, Gerard M, Raad J, Fenoy E, Rubiolo M, Chorostecki U, Gabaldón T, Ariel F, Di Persia LE, Milone DH, Stegmayer G. Secondary structure prediction of long noncoding RNA: review and experimental comparison of existing approaches. Brief Bioinform 2022:bbac205. [PMID: 35692094 DOI: 10.1093/bib/bbac205] [Reference Citation Analysis]
6 Gurgul A, Szmatoła T, Ocłoń E, Jasielczuk I, Semik-Gurgul E, Finno CJ, Petersen JL, Bellone R, Hales EN, Ząbek T, Arent Z, Kotula-Balak M, Bugno-Poniewierska M. Another lesson from unmapped reads: in-depth analysis of RNA-Seq reads from various horse tissues. J Appl Genet 2022. [PMID: 35670911 DOI: 10.1007/s13353-022-00705-z] [Reference Citation Analysis]
7 Guo F, Yuan Y, Chen Z, Gao F, Li X, Wang H, Wang X, Bai G. Downregulation of the long non-coding RNA MALAT1 in tenofovir-treated pregnant women with hepatitis B virus infection promotes immune recovery of natural killer cells via the has-miR-155-5p/HIF-1α axis. International Immunopharmacology 2022;107:108701. [DOI: 10.1016/j.intimp.2022.108701] [Reference Citation Analysis]
8 Fila M, Sobczuk A, Pawlowska E, Blasiak J. Epigenetic Connection of the Calcitonin Gene-Related Peptide and Its Potential in Migraine. Int J Mol Sci 2022;23:6151. [PMID: 35682830 DOI: 10.3390/ijms23116151] [Reference Citation Analysis]
9 Jaura R, Yeh SY, Montanera KN, Ialongo A, Anwar Z, Lu Y, Puwakdandawa K, Rhee HS. Extended intergenic DNA contributes to neuron-specific expression of neighboring genes in the mammalian nervous system. Nat Commun 2022;13:2733. [PMID: 35585070 DOI: 10.1038/s41467-022-30192-z] [Reference Citation Analysis]
10 Gonçalves KB, Appel RJC, Bôas LAV, Cardoso PF, Bôas GTV. Genomic insights into the diversity of non-coding RNAs in Bacillus cereus sensu lato. Curr Genet 2022. [PMID: 35552506 DOI: 10.1007/s00294-022-01240-4] [Reference Citation Analysis]
11 Najafi S. Circular RNAs as emerging players in cervical cancer tumorigenesis; A review to roles and biomarker potentials. Int J Biol Macromol 2022;206:939-53. [PMID: 35318084 DOI: 10.1016/j.ijbiomac.2022.03.103] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 3.0] [Reference Citation Analysis]
12 Wen S, Li C, Zhan X. Muti-omics integration analysis revealed molecular network alterations in human nonfunctional pituitary neuroendocrine tumors in the framework of 3P medicine. EPMA Journal. [DOI: 10.1007/s13167-022-00274-5] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 3.0] [Reference Citation Analysis]
13 Camilleri-robles C, Amador R, Klein CC, Guigó R, Corominas M, Ruiz-romero M. Genomic and functional conservation of lncRNAs: lessons from flies. Mamm Genome. [DOI: 10.1007/s00335-021-09939-4] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
14 Liu Q. The emerging roles of exosomal long non-coding RNAs in bladder cancer. J Cell Mol Med 2022. [PMID: 34981655 DOI: 10.1111/jcmm.17152] [Reference Citation Analysis]
15 Melo ESD, Wallau GL. Mosquito long non-coding RNAs are enriched with Transposable Elements. Genet Mol Biol 2022;45:e20210215. [DOI: 10.1590/1678-4685-gmb-2021-0215] [Reference Citation Analysis]
16 Akhlaghpour H. An RNA-Based Theory of Natural Universal Computation. J Theor Biol 2021;:110984. [PMID: 34979104 DOI: 10.1016/j.jtbi.2021.110984] [Cited by in Crossref: 5] [Cited by in F6Publishing: 1] [Article Influence: 5.0] [Reference Citation Analysis]
17 Panyushev N, Okorokova L, Danilov L, Adonin L. Pattern of Repetitive Element Transcription Segregate Cell Lineages during the Embryogenesis of Sea Urchin Strongylocentrotus purpuratus. Biomedicines 2021;9:1736. [PMID: 34829966 DOI: 10.3390/biomedicines9111736] [Reference Citation Analysis]
18 Huang H, Li L, Wen K. Interactions between long non‑coding RNAs and RNA‑binding proteins in cancer (Review). Oncol Rep 2021;46:256. [PMID: 34676873 DOI: 10.3892/or.2021.8207] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
19 Stitz M, Chaparro C, Lu Z, Olzog VJ, Weinberg CE, Blom J, Goesmann A, Grunau C, Grevelding CG. Satellite-Like W-Elements: Repetitive, Transcribed, and Putative Mobile Genetic Factors with Potential Roles for Biology and Evolution of Schistosoma mansoni. Genome Biol Evol 2021;13:evab204. [PMID: 34469545 DOI: 10.1093/gbe/evab204] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 1.0] [Reference Citation Analysis]
20 Gu J, Dai B, Shi X, He Z, Xu Y, Meng X, Zhu J. lncRNA HCG11 suppresses human osteosarcoma growth through upregulating p27 Kip1. Aging (Albany NY) 2021;13:21743-57. [PMID: 34518440 DOI: 10.18632/aging.203517] [Reference Citation Analysis]
21 Delgado-Olguín P, Oktaba K, Furlan-Magaril M. Editorial: Chromatin Spatial Configuration and Function in Metazoans. Front Genet 2021;12:734981. [PMID: 34456981 DOI: 10.3389/fgene.2021.734981] [Reference Citation Analysis]
22 Das L, Das JK, Mohapatra S, Nanda S. DNA numerical encoding schemes for exon prediction: a recent history. Nucleosides Nucleotides Nucleic Acids 2021;40:985-1017. [PMID: 34455915 DOI: 10.1080/15257770.2021.1966797] [Reference Citation Analysis]
23 Blasiak J, Hyttinen JMT, Szczepanska J, Pawlowska E, Kaarniranta K. Potential of Long Non-Coding RNAs in Age-Related Macular Degeneration. Int J Mol Sci 2021;22:9178. [PMID: 34502084 DOI: 10.3390/ijms22179178] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
24 Zhou L, Li J, Liu J, Wang A, Liu Y, Yu H, Ouyang H, Pang D. Investigation of the lncRNA THOR in Mice Highlights the Importance of Noncoding RNAs in Mammalian Male Reproduction. Biomedicines 2021;9:859. [PMID: 34440063 DOI: 10.3390/biomedicines9080859] [Cited by in F6Publishing: 2] [Reference Citation Analysis]
25 Yuan Z, Huang W. New Developments in Exosomal lncRNAs in Cardiovascular Diseases. Front Cardiovasc Med 2021;8:709169. [PMID: 34307511 DOI: 10.3389/fcvm.2021.709169] [Cited by in F6Publishing: 10] [Reference Citation Analysis]
26 Ahmad SF, Singchat W, Panthum T, Srikulnath K. Impact of Repetitive DNA Elements on Snake Genome Biology and Evolution. Cells 2021;10:1707. [PMID: 34359877 DOI: 10.3390/cells10071707] [Reference Citation Analysis]
27 Schmieder V, Novak N, Dhiman H, Nguyen LN, Serafimova E, Klanert G, Baumann M, Kildegaard HF, Borth N. A pooled CRISPR/AsCpf1 screen using paired gRNAs to induce genomic deletions in Chinese hamster ovary cells. Biotechnol Rep (Amst) 2021;31:e00649. [PMID: 34277363 DOI: 10.1016/j.btre.2021.e00649] [Reference Citation Analysis]
28 Jia H, Park SJ, Nakai K. A semi-supervised deep learning approach for predicting the functional effects of genomic non-coding variations. BMC Bioinformatics 2021;22:128. [PMID: 34078253 DOI: 10.1186/s12859-021-03999-8] [Reference Citation Analysis]
29 Bure IV, Nemtsova MV. Methylation and Noncoding RNAs in Gastric Cancer: Everything Is Connected. Int J Mol Sci 2021;22:5683. [PMID: 34073603 DOI: 10.3390/ijms22115683] [Cited by in Crossref: 5] [Cited by in F6Publishing: 3] [Article Influence: 5.0] [Reference Citation Analysis]
30 Singh D, Madhawan A, Roy J. Identification of multiple RNAs using feature fusion. Brief Bioinform 2021:bbab178. [PMID: 33971667 DOI: 10.1093/bib/bbab178] [Reference Citation Analysis]
31 Szcześniak MW, Kubiak MR, Wanowska E, Makałowska I. Comparative genomics in the search for conserved long noncoding RNAs. Essays Biochem 2021:EBC20200069. [PMID: 33885137 DOI: 10.1042/EBC20200069] [Reference Citation Analysis]
32 Liehr T. Repetitive Elements in Humans. Int J Mol Sci 2021;22:2072. [PMID: 33669810 DOI: 10.3390/ijms22042072] [Cited by in Crossref: 1] [Cited by in F6Publishing: 5] [Article Influence: 1.0] [Reference Citation Analysis]
33 Fonouni-Farde C, Ariel F, Crespi M. Plant Long Noncoding RNAs: New Players in the Field of Post-Transcriptional Regulations. Noncoding RNA 2021;7:12. [PMID: 33671131 DOI: 10.3390/ncrna7010012] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
34 Aísa-Marín I, García-Arroyo R, Mirra S, Marfany G. The Alter Retina: Alternative Splicing of Retinal Genes in Health and Disease. Int J Mol Sci 2021;22:1855. [PMID: 33673358 DOI: 10.3390/ijms22041855] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 2.0] [Reference Citation Analysis]
35 De Sanctis P, Filardo G, Abruzzo PM, Astolfi A, Bolotta A, Indio V, Di Martino A, Hofer C, Kern H, Löfler S, Marcacci M, Marini M, Zampieri S, Zucchini C. Non-Coding RNAs in the Transcriptional Network That Differentiates Skeletal Muscles of Sedentary from Long-Term Endurance- and Resistance-Trained Elderly. Int J Mol Sci 2021;22:1539. [PMID: 33546468 DOI: 10.3390/ijms22041539] [Reference Citation Analysis]
36 Li S, Yang Q, Zhou Z, Fu M, Yang X, Hao K, Liu Y. SNHG3 cooperates with ELAVL2 to modulate cell apoptosis and extracellular matrix accumulation by stabilizing SNAI2 in human trabecular meshwork cells under oxidative stress. Environ Toxicol 2021;36:1070-9. [PMID: 33522089 DOI: 10.1002/tox.23106] [Cited by in F6Publishing: 3] [Reference Citation Analysis]
37 Jiang J, Cheng L, Yan L, Ge M, Yang L, Ying H, Kong Q. Decoding the role of long noncoding RNAs in the healthy aging of centenarians. Brief Bioinform 2021:bbaa439. [PMID: 33517370 DOI: 10.1093/bib/bbaa439] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
38 Zhang M, Wang Y, Jiang L, Song X, Zheng A, Gao H, Wei M, Zhao L. LncRNA CBR3-AS1 regulates of breast cancer drug sensitivity as a competing endogenous RNA through the JNK1/MEK4-mediated MAPK signal pathway. J Exp Clin Cancer Res 2021;40:41. [PMID: 33494806 DOI: 10.1186/s13046-021-01844-7] [Cited by in Crossref: 2] [Cited by in F6Publishing: 7] [Article Influence: 2.0] [Reference Citation Analysis]
39 Li K, Xu J, Luo Y, Zou D, Han R, Zhong S, Zhao Q, Mang X, Li M, Si Y, Lu Y, Li P, Jin C, Wang Z, Wang F, Miao S, Wen B, Wang L, Ma Y, Yu J, Song W. Panoramic transcriptome analysis and functional screening of long noncoding RNAs in mouse spermatogenesis. Genome Res 2021;31:13-26. [PMID: 33328167 DOI: 10.1101/gr.264333.120] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
40 Wu Z, Luo J, Chen R. Genetic variations associated with long noncoding RNAs. Essays in Biochemistry 2020;64:867-73. [DOI: 10.1042/ebc20200033] [Cited by in Crossref: 1] [Article Influence: 0.5] [Reference Citation Analysis]
41 Voronova A, Rendón-Anaya M, Ingvarsson P, Kalendar R, Ruņģis D. Comparative Study of Pine Reference Genomes Reveals Transposable Element Interconnected Gene Networks. Genes (Basel) 2020;11:E1216. [PMID: 33081418 DOI: 10.3390/genes11101216] [Cited by in Crossref: 3] [Cited by in F6Publishing: 6] [Article Influence: 1.5] [Reference Citation Analysis]
42 Ke L, Yang DC, Wang Y, Ding Y, Gao G. AnnoLnc2: the one-stop portal to systematically annotate novel lncRNAs for human and mouse. Nucleic Acids Res 2020;48:W230-8. [PMID: 32406920 DOI: 10.1093/nar/gkaa368] [Cited by in Crossref: 10] [Cited by in F6Publishing: 18] [Article Influence: 5.0] [Reference Citation Analysis]
43 Leo L, Marchetti M, Giunta S, Fanti L. Epigenetics as an Evolutionary Tool for Centromere Flexibility. Genes (Basel) 2020;11:E809. [PMID: 32708654 DOI: 10.3390/genes11070809] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
44 Wang J, Huang F, Shi Y, Zhang Q, Xu S, Yao Y, Jiang R. RP11-323N12.5 promotes the malignancy and immunosuppression of human gastric cancer by increasing YAP1 transcription. Gastric Cancer 2021;24:85-102. [PMID: 32623586 DOI: 10.1007/s10120-020-01099-9] [Cited by in Crossref: 11] [Cited by in F6Publishing: 13] [Article Influence: 5.5] [Reference Citation Analysis]
45 Lanciano S, Cristofari G. Measuring and interpreting transposable element expression. Nat Rev Genet 2020;21:721-36. [PMID: 32576954 DOI: 10.1038/s41576-020-0251-y] [Cited by in Crossref: 45] [Cited by in F6Publishing: 64] [Article Influence: 22.5] [Reference Citation Analysis]
46 Sedano MJ, Harrison AL, Zilaie M, Das C, Choudhari R, Ramos E, Gadad SS. Emerging Roles of Estrogen-Regulated Enhancer and Long Non-Coding RNAs. Int J Mol Sci 2020;21:E3711. [PMID: 32466143 DOI: 10.3390/ijms21103711] [Cited by in Crossref: 3] [Cited by in F6Publishing: 1] [Article Influence: 1.5] [Reference Citation Analysis]
47 Linquist S, Doolittle WF, Palazzo AF. Getting clear about the F-word in genomics. PLoS Genet 2020;16:e1008702. [PMID: 32236092 DOI: 10.1371/journal.pgen.1008702] [Cited by in Crossref: 7] [Cited by in F6Publishing: 6] [Article Influence: 3.5] [Reference Citation Analysis]
48 Ebelt ND, Zuniga E, Johnson BL, Diamond DJ, Manuel ER. 5-Azacytidine Potentiates Anti-tumor Immunity in a Model of Pancreatic Ductal Adenocarcinoma. Front Immunol 2020;11:538. [PMID: 32296439 DOI: 10.3389/fimmu.2020.00538] [Cited by in F6Publishing: 4] [Reference Citation Analysis]
49 Ruan J, Wang S, Wang J. Mechanism and regulation of pyroptosis-mediated in cancer cell death. Chem Biol Interact 2020;323:109052. [PMID: 32169591 DOI: 10.1016/j.cbi.2020.109052] [Cited by in Crossref: 20] [Cited by in F6Publishing: 22] [Article Influence: 10.0] [Reference Citation Analysis]
50 Xu H, Chen Y, Zhuang J, Zhu S, Xu B, Hong J. The role and mechanism of lncRNA NEAT1 in the fibrosis of pulmonary epithelial cell. Mol Cell Toxicol 2020;16:185-91. [DOI: 10.1007/s13273-019-00069-2] [Cited by in Crossref: 1] [Article Influence: 0.5] [Reference Citation Analysis]