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For: Jain A, Wang G, Vasquez KM. DNA triple helices: biological consequences and therapeutic potential. Biochimie 2008;90:1117-30. [PMID: 18331847 DOI: 10.1016/j.biochi.2008.02.011] [Cited by in Crossref: 174] [Cited by in F6Publishing: 142] [Article Influence: 12.4] [Reference Citation Analysis]
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13 Völker J, Klump HH, Breslauer KJ. DNA energy landscapes via calorimetric detection of microstate ensembles of metastable macrostates and triplet repeat diseases. Proc Natl Acad Sci U S A 2008;105:18326-30. [PMID: 19015511 DOI: 10.1073/pnas.0810376105] [Cited by in Crossref: 17] [Cited by in F6Publishing: 16] [Article Influence: 1.2] [Reference Citation Analysis]
14 Riechert-Krause F, Autenrieth K, Eick A, Weisz K. Spectroscopic and calorimetric studies on the binding of an indoloquinoline drug to parallel and antiparallel DNA triplexes. Biochemistry 2013;52:41-52. [PMID: 23234257 DOI: 10.1021/bi301381h] [Cited by in Crossref: 21] [Cited by in F6Publishing: 18] [Article Influence: 2.1] [Reference Citation Analysis]
15 Taniguchi Y, Wang L, Okamura H, Sasaki S. Synthesis of 2'-deoxy-4-aminopyridinylpseudocytidine Derivatives for Incorporation Into Triplex Forming Oligonucleotides. Curr Protoc Nucleic Acid Chem 2019;77:e80. [PMID: 30884181 DOI: 10.1002/cpnc.80] [Reference Citation Analysis]
16 Pages BJ, Ang DL, Wright EP, Aldrich-wright JR. Metal complex interactions with DNA. Dalton Trans 2015;44:3505-26. [DOI: 10.1039/c4dt02700k] [Cited by in Crossref: 182] [Cited by in F6Publishing: 27] [Article Influence: 26.0] [Reference Citation Analysis]
17 Mládek A, Krepl M, Svozil D, Čech P, Otyepka M, Banáš P, Zgarbová M, Jurečka P, Šponer J. Benchmark quantum-chemical calculations on a complete set of rotameric families of the DNA sugar–phosphate backbone and their comparison with modern density functional theory. Phys Chem Chem Phys 2013;15:7295. [DOI: 10.1039/c3cp44383c] [Cited by in Crossref: 26] [Cited by in F6Publishing: 21] [Article Influence: 2.9] [Reference Citation Analysis]
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19 Maciaszek A, Krakowiak A, Janicka M, Tomaszewska-Antczak A, Sobczak M, Mikołajczyk B, Guga P. LNA units present in the (2'-OMe)-RNA strand stabilize parallel duplexes (2'-OMe)-RNA/[All-R(P)-PS]-DNA and parallel triplexes (2'-OMe)-RNA/[All-R(P)-PS]-DNA/RNA. An improved tool for the inhibition of reverse transcription. Org Biomol Chem 2015;13:2375-84. [PMID: 25564351 DOI: 10.1039/c4ob02364a] [Cited by in Crossref: 9] [Cited by in F6Publishing: 3] [Article Influence: 1.3] [Reference Citation Analysis]
20 Li J, Begbie A, Boehm BJ, Button A, Whidborne C, Pouferis Y, Huang DM, Pukala TL. Ion Mobility-Mass Spectrometry Reveals Details of Formation and Structure for GAA·TCC DNA and RNA Triplexes. J Am Soc Mass Spectrom 2019;30:103-12. [PMID: 30341580 DOI: 10.1007/s13361-018-2077-9] [Cited by in Crossref: 5] [Cited by in F6Publishing: 4] [Article Influence: 1.3] [Reference Citation Analysis]
21 Biver T. Stabilisation of non-canonical structures of nucleic acids by metal ions and small molecules. Coordination Chemistry Reviews 2013;257:2765-83. [DOI: 10.1016/j.ccr.2013.04.016] [Cited by in Crossref: 30] [Cited by in F6Publishing: 20] [Article Influence: 3.3] [Reference Citation Analysis]
22 Carr CE, Ganugula R, Shikiya R, Soto AM, Marky LA. Effect of dC → d(m5C) substitutions on the folding of intramolecular triplexes with mixed TAT and C+GC base triplets. Biochimie 2018;146:156-65. [PMID: 29277568 DOI: 10.1016/j.biochi.2017.12.008] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 0.6] [Reference Citation Analysis]
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24 Čech P, Kukal J, Černý J, Schneider B, Svozil D. Automatic workflow for the classification of local DNA conformations. BMC Bioinformatics 2013;14:205. [PMID: 23800225 DOI: 10.1186/1471-2105-14-205] [Cited by in Crossref: 16] [Cited by in F6Publishing: 13] [Article Influence: 1.8] [Reference Citation Analysis]
25 Kaushik S, Kaushik M, Svinarchuk F, Malvy C, Fermandjian S, Kukreti S. Presence of divalent cation is not mandatory for the formation of intramolecular purine-motif triplex containing human c-jun protooncogene target. Biochemistry 2011;50:4132-42. [PMID: 21381700 DOI: 10.1021/bi1012589] [Cited by in Crossref: 9] [Cited by in F6Publishing: 8] [Article Influence: 0.8] [Reference Citation Analysis]
26 Gloss BS, Dinger ME. Realizing the significance of noncoding functionality in clinical genomics. Exp Mol Med. 2018;50:97. [PMID: 30089779 DOI: 10.1038/s12276-018-0087-0] [Cited by in Crossref: 42] [Cited by in F6Publishing: 30] [Article Influence: 10.5] [Reference Citation Analysis]
27 Malnuit V, Duca M, Benhida R. Targeting DNA base pair mismatch with artificial nucleobases. Advances and perspectives in triple helix strategy. Org Biomol Chem 2011;9:326-36. [PMID: 21046036 DOI: 10.1039/c0ob00418a] [Cited by in Crossref: 50] [Cited by in F6Publishing: 12] [Article Influence: 4.2] [Reference Citation Analysis]
28 Del Mundo IMA, Cho EJ, Dalby KN, Vasquez KM. A tunable assay for modulators of genome-destabilizing DNA structures. Nucleic Acids Res 2019;47:e73. [PMID: 30949695 DOI: 10.1093/nar/gkz237] [Cited by in Crossref: 3] [Cited by in F6Publishing: 3] [Article Influence: 1.5] [Reference Citation Analysis]
29 Du X, Gertz EM, Wojtowicz D, Zhabinskaya D, Levens D, Benham CJ, Schäffer AA, Przytycka TM. Potential non-B DNA regions in the human genome are associated with higher rates of nucleotide mutation and expression variation. Nucleic Acids Res 2014;42:12367-79. [PMID: 25336616 DOI: 10.1093/nar/gku921] [Cited by in Crossref: 28] [Cited by in F6Publishing: 21] [Article Influence: 3.5] [Reference Citation Analysis]
30 Lange SS, Reddy MC, Vasquez KM. Human HMGB1 directly facilitates interactions between nucleotide excision repair proteins on triplex-directed psoralen interstrand crosslinks. DNA Repair (Amst) 2009;8:865-72. [PMID: 19446504 DOI: 10.1016/j.dnarep.2009.04.001] [Cited by in Crossref: 31] [Cited by in F6Publishing: 31] [Article Influence: 2.4] [Reference Citation Analysis]
31 Doluca O, Withers JM, Filichev VV. Molecular engineering of guanine-rich sequences: Z-DNA, DNA triplexes, and G-quadruplexes. Chem Rev 2013;113:3044-83. [PMID: 23391174 DOI: 10.1021/cr300225q] [Cited by in Crossref: 128] [Cited by in F6Publishing: 110] [Article Influence: 14.2] [Reference Citation Analysis]
32 Wang G, Zhao J, Vasquez KM. Methods to determine DNA structural alterations and genetic instability. Methods 2009;48:54-62. [PMID: 19245837 DOI: 10.1016/j.ymeth.2009.02.012] [Cited by in Crossref: 13] [Cited by in F6Publishing: 13] [Article Influence: 1.0] [Reference Citation Analysis]
33 Lohani N, Rajeswari MR. Preferential binding of anticancer drugs to triplex DNA compared to duplex DNA: a spectroscopic and calorimetric study. RSC Adv 2016;6:39903-17. [DOI: 10.1039/c6ra03514k] [Cited by in Crossref: 4] [Article Influence: 0.7] [Reference Citation Analysis]
34 Taniguchi Y, Okamura H, Fujino N, Sasaki S. Synthesis of 1′-phenyl-2′-OMe ribose analogues connecting the thymine base at the 1′ position through a flexible linker for the formation of a stable anti-parallel triplex DNA. Tetrahedron 2013;69:600-6. [DOI: 10.1016/j.tet.2012.11.016] [Cited by in Crossref: 6] [Cited by in F6Publishing: 2] [Article Influence: 0.7] [Reference Citation Analysis]
35 Obata S, Asamitsu S, Hashiya K, Bando T, Sugiyama H. G-Quadruplex Induction by the Hairpin Pyrrole-Imidazole Polyamide Dimer. Biochemistry 2018;57:498-502. [PMID: 29236465 DOI: 10.1021/acs.biochem.7b01059] [Cited by in Crossref: 7] [Cited by in F6Publishing: 5] [Article Influence: 1.4] [Reference Citation Analysis]
36 Govan JM, Uprety R, Hemphill J, Lively MO, Deiters A. Regulation of transcription through light-activation and light-deactivation of triplex-forming oligonucleotides in mammalian cells. ACS Chem Biol 2012;7:1247-56. [PMID: 22540192 DOI: 10.1021/cb300161r] [Cited by in Crossref: 55] [Cited by in F6Publishing: 50] [Article Influence: 5.5] [Reference Citation Analysis]
37 Torigoe H, Maruyama A, Obika S, Imanishi T, Katayama T. Synergistic stabilization of nucleic acid assembly by 2'-O,4'-C-methylene-bridged nucleic acid modification and additions of comb-type cationic copolymers. Biochemistry 2009;48:3545-53. [PMID: 19170613 DOI: 10.1021/bi801795z] [Cited by in Crossref: 15] [Cited by in F6Publishing: 12] [Article Influence: 1.2] [Reference Citation Analysis]
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39 Zhao J, Wang G, Del Mundo IM, McKinney JA, Lu X, Bacolla A, Boulware SB, Zhang C, Zhang H, Ren P, Freudenreich CH, Vasquez KM. Distinct Mechanisms of Nuclease-Directed DNA-Structure-Induced Genetic Instability in Cancer Genomes. Cell Rep 2018;22:1200-10. [PMID: 29386108 DOI: 10.1016/j.celrep.2018.01.014] [Cited by in Crossref: 21] [Cited by in F6Publishing: 22] [Article Influence: 7.0] [Reference Citation Analysis]
40 Buske FA, Mattick JS, Bailey TL. Potential in vivo roles of nucleic acid triple-helices. RNA Biol 2011;8:427-39. [PMID: 21525785 DOI: 10.4161/rna.8.3.14999] [Cited by in Crossref: 133] [Cited by in F6Publishing: 116] [Article Influence: 12.1] [Reference Citation Analysis]
41 Liu M, Wang Z, Pan L, Cui Y, Liu Y. A SERS/fluorescence dual-mode nanosensor based on the human telomeric G-quadruplex DNA: Application to mercury (II) detection. Biosens Bioelectron 2015;69:142-7. [PMID: 25725462 DOI: 10.1016/j.bios.2015.02.009] [Cited by in Crossref: 27] [Cited by in F6Publishing: 26] [Article Influence: 3.9] [Reference Citation Analysis]
42 Mendez MA, Szalai VA. Synapsable quadruplex-mediated fibers. Nanoscale Res Lett 2013;8:210. [PMID: 23641903 DOI: 10.1186/1556-276X-8-210] [Cited by in Crossref: 11] [Cited by in F6Publishing: 1] [Article Influence: 1.2] [Reference Citation Analysis]
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44 Massoni-Laporte A, Perrot M, Ponger L, Boucherie H, Guieysse-Peugeot AL. Proteome analysis of a CTR9 deficient yeast strain suggests that Ctr9 has function(s) independent of the Paf1 complex. Biochim Biophys Acta 2012;1824:759-68. [PMID: 22446411 DOI: 10.1016/j.bbapap.2012.02.010] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.2] [Reference Citation Analysis]
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47 Schneider UV, Mikkelsen ND, Jøhnk N, Okkels LM, Westh H, Lisby G. Optimal design of parallel triplex forming oligonucleotides containing Twisted Intercalating Nucleic Acids--TINA. Nucleic Acids Res 2010;38:4394-403. [PMID: 20338879 DOI: 10.1093/nar/gkq188] [Cited by in Crossref: 11] [Cited by in F6Publishing: 11] [Article Influence: 0.9] [Reference Citation Analysis]
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51 Solé A, Delagoutte E, Ciudad CJ, Noé V, Alberti P. Polypurine reverse-Hoogsteen (PPRH) oligonucleotides can form triplexes with their target sequences even under conditions where they fold into G-quadruplexes. Sci Rep 2017;7:39898. [PMID: 28067256 DOI: 10.1038/srep39898] [Cited by in Crossref: 8] [Cited by in F6Publishing: 7] [Article Influence: 1.6] [Reference Citation Analysis]
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54 Wang G, Zhao J, Vasquez KM. Detection of cis- and trans-acting Factors in DNA Structure-Induced Genetic Instability Using In silico and Cellular Approaches. Front Genet 2016;7:135. [PMID: 27532010 DOI: 10.3389/fgene.2016.00135] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 0.3] [Reference Citation Analysis]
55 Nelson LD, Bender C, Mannsperger H, Buergy D, Kambakamba P, Mudduluru G, Korf U, Hughes D, Van Dyke MW, Allgayer H. Triplex DNA-binding proteins are associated with clinical outcomes revealed by proteomic measurements in patients with colorectal cancer. Mol Cancer. 2012;11:38. [PMID: 22682314 DOI: 10.1186/1476-4598-11-38] [Cited by in Crossref: 19] [Cited by in F6Publishing: 18] [Article Influence: 1.9] [Reference Citation Analysis]
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58 Zhang J, Fakharzadeh A, Pan F, Roland C, Sagui C. Atypical structures of GAA/TTC trinucleotide repeats underlying Friedreich's ataxia: DNA triplexes and RNA/DNA hybrids. Nucleic Acids Res 2020;48:9899-917. [PMID: 32821947 DOI: 10.1093/nar/gkaa665] [Cited by in Crossref: 3] [Cited by in F6Publishing: 1] [Article Influence: 1.5] [Reference Citation Analysis]
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61 Jain A, Bacolla A, Chakraborty P, Grosse F, Vasquez KM. Human DHX9 helicase unwinds triple-helical DNA structures. Biochemistry 2010;49:6992-9. [PMID: 20669935 DOI: 10.1021/bi100795m] [Cited by in Crossref: 71] [Cited by in F6Publishing: 66] [Article Influence: 5.9] [Reference Citation Analysis]
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