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For: Conte F, Fiscon G, Licursi V, Bizzarri D, D'Antò T, Farina L, Paci P. A paradigm shift in medicine: A comprehensive review of network-based approaches. Biochim Biophys Acta Gene Regul Mech 2020;1863:194416. [PMID: 31382052 DOI: 10.1016/j.bbagrm.2019.194416] [Cited by in Crossref: 33] [Cited by in F6Publishing: 25] [Article Influence: 11.0] [Reference Citation Analysis]
Number Citing Articles
1 Saik OV, Klimontov VV. Bioinformatic Reconstruction and Analysis of Gene Networks Related to Glucose Variability in Diabetes and Its Complications. Int J Mol Sci 2020;21:E8691. [PMID: 33217980 DOI: 10.3390/ijms21228691] [Cited by in Crossref: 6] [Cited by in F6Publishing: 3] [Article Influence: 3.0] [Reference Citation Analysis]
2 MotieGhader H, Safavi E, Rezapour A, Amoodizaj FF, Iranifam RA. Drug repurposing for coronavirus (SARS-CoV-2) based on gene co-expression network analysis. Sci Rep 2021;11:21872. [PMID: 34750486 DOI: 10.1038/s41598-021-01410-3] [Reference Citation Analysis]
3 Mohammadi E, Benfeitas R, Turkez H, Boren J, Nielsen J, Uhlen M, Mardinoglu A. Applications of Genome-Wide Screening and Systems Biology Approaches in Drug Repositioning. Cancers (Basel) 2020;12:E2694. [PMID: 32967266 DOI: 10.3390/cancers12092694] [Cited by in Crossref: 5] [Cited by in F6Publishing: 4] [Article Influence: 2.5] [Reference Citation Analysis]
4 Recanatini M, Cabrelle C. Drug Research Meets Network Science: Where Are We? J Med Chem 2020;63:8653-66. [PMID: 32338900 DOI: 10.1021/acs.jmedchem.9b01989] [Cited by in Crossref: 6] [Cited by in F6Publishing: 4] [Article Influence: 3.0] [Reference Citation Analysis]
5 Mavridou D, Psatha K, Aivaliotis M. Proteomics and Drug Repurposing in CLL towards Precision Medicine. Cancers (Basel) 2021;13:3391. [PMID: 34298607 DOI: 10.3390/cancers13143391] [Reference Citation Analysis]
6 Yan W, Liu X, Wang Y, Han S, Wang F, Liu X, Xiao F, Hu G. Identifying Drug Targets in Pancreatic Ductal Adenocarcinoma Through Machine Learning, Analyzing Biomolecular Networks, and Structural Modeling. Front Pharmacol 2020;11:534. [PMID: 32425783 DOI: 10.3389/fphar.2020.00534] [Cited by in Crossref: 5] [Cited by in F6Publishing: 5] [Article Influence: 2.5] [Reference Citation Analysis]
7 Wang F, Han S, Yang J, Yan W, Hu G. Knowledge-Guided "Community Network" Analysis Reveals the Functional Modules and Candidate Targets in Non-Small-Cell Lung Cancer. Cells 2021;10:402. [PMID: 33669233 DOI: 10.3390/cells10020402] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
8 Cakir M, Obernier K, Forget A, Krogan NJ. Target Discovery for Host-Directed Antiviral Therapies: Application of Proteomics Approaches. mSystems 2021;6:e0038821. [PMID: 34519533 DOI: 10.1128/mSystems.00388-21] [Reference Citation Analysis]
9 Lawler D, Tangredi B, Becker J, Widga C, Etnier M, Martin T, Schulz K, Kohn L. The nature of coxofemoral joint pathology across family Canidae. Anat Rec (Hoboken) 2021. [PMID: 34837349 DOI: 10.1002/ar.24846] [Reference Citation Analysis]
10 Takahashi Y, Terada T, Muto Y. Systems Level Analysis and Identification of Pathways and Key Genes Associated with Delirium. Genes (Basel) 2020;11:E1225. [PMID: 33086708 DOI: 10.3390/genes11101225] [Cited by in Crossref: 3] [Cited by in F6Publishing: 2] [Article Influence: 1.5] [Reference Citation Analysis]
11 Savino A, Provero P, Poli V. Differential Co-Expression Analyses Allow the Identification of Critical Signalling Pathways Altered during Tumour Transformation and Progression. Int J Mol Sci 2020;21:E9461. [PMID: 33322692 DOI: 10.3390/ijms21249461] [Cited by in Crossref: 2] [Cited by in F6Publishing: 2] [Article Influence: 1.0] [Reference Citation Analysis]
12 Lv QY, Zou HZ, Xu YY, Shao ZY, Wu RQ, Li KJ, Deng X, Gu DN, Jiang HX, Su M, Zou CL. Expression levels of chemokine (C-X-C motif) ligands CXCL1 and CXCL3 as prognostic biomarkers in rectal adenocarcinoma: evidence from Gene Expression Omnibus (GEO) analyses. Bioengineered 2021;12:3711-25. [PMID: 34269159 DOI: 10.1080/21655979.2021.1952772] [Reference Citation Analysis]
13 Lin N, Lin JZ, Tanaka Y, Sun P, Zhou X. Identification and validation of a five-lncRNA signature for predicting survival with targeted drug candidates in ovarian cancer. Bioengineered 2021;12:3263-74. [PMID: 34224310 DOI: 10.1080/21655979.2021.1946632] [Reference Citation Analysis]
14 Mukherjee S. Quiescent stem cell marker genes in glioma gene networks are sufficient to distinguish between normal and glioblastoma (GBM) samples. Sci Rep 2020;10:10937. [PMID: 32616845 DOI: 10.1038/s41598-020-67753-5] [Cited by in Crossref: 7] [Cited by in F6Publishing: 3] [Article Influence: 3.5] [Reference Citation Analysis]
15 Fiscon G, Paci P. SAveRUNNER: an R-based tool for drug repurposing. BMC Bioinformatics 2021;22:150. [PMID: 33757425 DOI: 10.1186/s12859-021-04076-w] [Cited by in Crossref: 6] [Cited by in F6Publishing: 8] [Article Influence: 6.0] [Reference Citation Analysis]
16 Rastegari E, Orn D, Zahiri M, Nelson C, Ali H, Siu KC. Assessing Laparoscopic Surgical Skills Using Similarity Network Models: A Pilot Study. Surg Innov 2021;28:600-10. [PMID: 33745371 DOI: 10.1177/15533506211002753] [Reference Citation Analysis]
17 Wei P, Long D, Tan Y, Xing W, Li X, Yang K, Liu H. Integrated Pharmacogenetics Analysis of the Three Fangjis Decoctions for Treating Arrhythmias Based on Molecular Network Patterns. Front Cardiovasc Med 2021;8:726694. [PMID: 35004871 DOI: 10.3389/fcvm.2021.726694] [Reference Citation Analysis]
18 Ohsawa S, Umemura T, Terada T, Muto Y. Network and Evolutionary Analysis of Human Epigenetic Regulators to Unravel Disease Associations. Genes (Basel) 2020;11:E1457. [PMID: 33291839 DOI: 10.3390/genes11121457] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
19 Xu J, Wang X, Ke Q, Liao K, Wan Y, Zhang K, Zhang G, Wang X. Combined bioinformatics technology to explore pivot genes and related clinical prognosis in the development of gastric cancer. Sci Rep 2021;11:15412. [PMID: 34326374 DOI: 10.1038/s41598-021-94291-5] [Reference Citation Analysis]
20 Szklarczyk D, Gable AL, Nastou KC, Lyon D, Kirsch R, Pyysalo S, Doncheva NT, Legeay M, Fang T, Bork P, Jensen LJ, von Mering C. The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets. Nucleic Acids Res 2021;49:D605-12. [PMID: 33237311 DOI: 10.1093/nar/gkaa1074] [Cited by in Crossref: 56] [Cited by in F6Publishing: 73] [Article Influence: 56.0] [Reference Citation Analysis]
21 Motieghader H, Tabrizi-nezhadi P, Deldar Abad Paskeh M, Baradaran B, Mokhtarzadeh A, Hashemi M, Lanjanian H, Jazayeri SM, Maleki M, Khodadadi E, Nematzadeh S, Kiani F, Maghsoudloo M, Masoudi-nejad A. Drug repositioning in non-small cell lung cancer (NSCLC) using gene co-expression and drug–gene interaction networks analysis. Sci Rep 2022;12. [DOI: 10.1038/s41598-022-13719-8] [Reference Citation Analysis]
22 Oommen AM, Cunningham S, O'Súilleabháin PS, Hughes BM, Joshi L. An integrative network analysis framework for identifying molecular functions in complex disorders examining major depressive disorder as a test case. Sci Rep 2021;11:9645. [PMID: 33958659 DOI: 10.1038/s41598-021-89040-7] [Reference Citation Analysis]
23 Yu H, Guo Y, Chen J, Chen X, Jia P, Zhao Z. Rewired Pathways and Disrupted Pathway Crosstalk in Schizophrenia Transcriptomes by Multiple Differential Coexpression Methods. Genes (Basel) 2021;12:665. [PMID: 33946654 DOI: 10.3390/genes12050665] [Reference Citation Analysis]
24 Ginsberg SD, Neubert TA, Sharma S, Digwal CS, Yan P, Timbus C, Wang T, Chiosis G. Disease-specific interactome alterations via epichaperomics: the case for Alzheimer's disease. FEBS J 2021. [PMID: 34028172 DOI: 10.1111/febs.16031] [Cited by in F6Publishing: 1] [Reference Citation Analysis]
25 Martinez-Hernandez JE, Hammoud Z, de Sousa AM, Kramer F, Monte-Neto RLD, Maracaja-Coutinho V, Martin AJM. Network-Based Approaches Reveal Potential Therapeutic Targets for Host-Directed Antileishmanial Therapy Driving Drug Repurposing. Microbiol Spectr 2021;9:e0101821. [PMID: 34668739 DOI: 10.1128/Spectrum.01018-21] [Reference Citation Analysis]
26 Farooqui A, Alhazmi A, Haque S, Tamkeen N, Mehmankhah M, Tazyeen S, Ali S, Ishrat R. Network-based analysis of key regulatory genes implicated in Type 2 Diabetes Mellitus and Recurrent Miscarriages in Turner Syndrome. Sci Rep 2021;11:10662. [PMID: 34021221 DOI: 10.1038/s41598-021-90171-0] [Reference Citation Analysis]
27 Ebrahimi Sadrabadi A, Bereimipour A, Jalili A, Gholipurmalekabadi M, Farhadihosseinabadi B, Seifalian AM. The risk of pancreatic adenocarcinoma following SARS-CoV family infection. Sci Rep 2021;11:12948. [PMID: 34155232 DOI: 10.1038/s41598-021-92068-4] [Reference Citation Analysis]
28 Zhu K, Pian C, Xiang Q, Liu X, Chen Y. Personalized analysis of breast cancer using sample-specific networks. PeerJ 2020;8:e9161. [PMID: 32461838 DOI: 10.7717/peerj.9161] [Cited by in Crossref: 1] [Cited by in F6Publishing: 1] [Article Influence: 0.5] [Reference Citation Analysis]
29 Wang Y, Zhao M, Zhang Y. Identification of fibronectin 1 (FN1) and complement component 3 (C3) as immune infiltration-related biomarkers for diabetic nephropathy using integrated bioinformatic analysis. Bioengineered 2021;12:5386-401. [PMID: 34424825 DOI: 10.1080/21655979.2021.1960766] [Reference Citation Analysis]
30 Paci P, Fiscon G, Conte F, Wang RS, Farina L, Loscalzo J. Gene co-expression in the interactome: moving from correlation toward causation via an integrated approach to disease module discovery. NPJ Syst Biol Appl 2021;7:3. [PMID: 33479222 DOI: 10.1038/s41540-020-00168-0] [Cited by in Crossref: 12] [Cited by in F6Publishing: 11] [Article Influence: 12.0] [Reference Citation Analysis]
31 Li JP, Zeng SH, Zhang YH, Liu YJ. Bioinformatics-based analysis of the association between the A1-chimaerin (CHN1) gene and gastric cancer. Bioengineered 2021;12:2874-89. [PMID: 34152250 DOI: 10.1080/21655979.2021.1940621] [Reference Citation Analysis]
32 Nakazawa MA, Tamada Y, Tanaka Y, Ikeguchi M, Higashihara K, Okuno Y. Novel cancer subtyping method based on patient-specific gene regulatory network. Sci Rep 2021;11:23653. [PMID: 34880275 DOI: 10.1038/s41598-021-02394-w] [Reference Citation Analysis]