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For: Verhoeckx KC, Bijlsma S, de Groene EM, Witkamp RF, van der Greef J, Rodenburg RJ. A combination of proteomics, principal component analysis and transcriptomics is a powerful tool for the identification of biomarkers for macrophage maturation in the U937 cell line. Proteomics. 2004;4:1014-1028. [PMID: 15048983 DOI: 10.1002/pmic.200300669] [Cited by in Crossref: 94] [Cited by in F6Publishing: 92] [Article Influence: 5.2] [Reference Citation Analysis]
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6 Verhoeckx KC, Korthout HA, van Meeteren-Kreikamp AP, Ehlert KA, Wang M, van der Greef J, Rodenburg RJ, Witkamp RF. Unheated Cannabis sativa extracts and its major compound THC-acid have potential immuno-modulating properties not mediated by CB1 and CB2 receptor coupled pathways. Int Immunopharmacol 2006;6:656-65. [PMID: 16504929 DOI: 10.1016/j.intimp.2005.10.002] [Cited by in Crossref: 51] [Cited by in F6Publishing: 40] [Article Influence: 3.0] [Reference Citation Analysis]
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8 Olivetta E, Pietraforte D, Schiavoni I, Minetti M, Federico M, Sanchez M. HIV-1 Nef regulates the release of superoxide anions from human macrophages. Biochem J 2005;390:591-602. [PMID: 15847608 DOI: 10.1042/BJ20042139] [Cited by in Crossref: 31] [Cited by in F6Publishing: 21] [Article Influence: 1.9] [Reference Citation Analysis]
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11 Harrill AH, Rusyn I. Systems biology and functional genomics approaches for the identification of cellular responses to drug toxicity. Expert Opin Drug Metab Toxicol 2008;4:1379-89. [PMID: 18950280 DOI: 10.1517/17425255.4.11.1379] [Cited by in Crossref: 49] [Cited by in F6Publishing: 34] [Article Influence: 3.8] [Reference Citation Analysis]
12 Enose Y, Destache CJ, Mack AL, Anderson JR, Ullrich F, Ciborowski PS, Gendelman HE. Proteomic fingerprints distinguish microglia, bone marrow, and spleen macrophage populations. Glia 2005;51:161-72. [DOI: 10.1002/glia.20193] [Cited by in Crossref: 26] [Cited by in F6Publishing: 22] [Article Influence: 1.5] [Reference Citation Analysis]
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14 Kucur M, Isman FK, Balci C, Onal B, Hacibekiroglu M, Ozkan F, Ozkan A. Serum YKL-40 levels and chitotriosidase activity as potential biomarkers in primary prostate cancer and benign prostatic hyperplasia. Urol Oncol. 2008;26:47-52. [PMID: 18190830 DOI: 10.1016/j.urolonc.2007.07.020] [Cited by in Crossref: 28] [Cited by in F6Publishing: 33] [Article Influence: 2.0] [Reference Citation Analysis]
15 Oliveira IB, Groh KJ, Stadnicka-Michalak J, Schönenberger R, Beiras R, Barroso CM, Langford KH, Thomas KV, Suter MJ. Tralopyril bioconcentration and effects on the gill proteome of the Mediterranean mussel Mytilus galloprovincialis. Aquat Toxicol 2016;177:198-210. [PMID: 27295630 DOI: 10.1016/j.aquatox.2016.05.026] [Cited by in Crossref: 15] [Cited by in F6Publishing: 13] [Article Influence: 2.5] [Reference Citation Analysis]
16 Häuser F, Deyle C, Berard D, Neukirch C, Glowacki C, Bickmann JK, Wenzel JJ, Lackner KJ, Rossmann H. Macrophage-stimulating protein polymorphism rs3197999 is associated with a gain of function: implications for inflammatory bowel disease. Genes Immun 2012;13:321-7. [PMID: 22237417 DOI: 10.1038/gene.2011.88] [Cited by in Crossref: 16] [Cited by in F6Publishing: 13] [Article Influence: 1.6] [Reference Citation Analysis]
17 Raghunathan D, Radford PM, Gell C, Negus D, Moore C, Till R, Tighe PJ, Wheatley SP, Martinez-Pomares L, Sockett RE, Tyson J. Engulfment, persistence and fate of Bdellovibrio bacteriovorus predators inside human phagocytic cells informs their future therapeutic potential. Sci Rep 2019;9:4293. [PMID: 30862785 DOI: 10.1038/s41598-019-40223-3] [Cited by in Crossref: 10] [Cited by in F6Publishing: 9] [Article Influence: 3.3] [Reference Citation Analysis]
18 Vivanco F, Padial LR, Darde VM, de la Cuesta F, Alvarez-Llamas G, Diaz-Prieto N, Barderas MG. Proteomic Biomarkers of Atherosclerosis. Biomark Insights 2008;3:101-13. [PMID: 19578499 DOI: 10.4137/bmi.s488] [Cited by in Crossref: 19] [Cited by in F6Publishing: 7] [Article Influence: 1.4] [Reference Citation Analysis]
19 Rollins DK, Zhai D, Joe AL, Guidarelli JW, Murarka A, Gonzalez R. A novel data mining method to identify assay-specific signatures in functional genomic studies. BMC Bioinformatics 2006;7:377. [PMID: 16907975 DOI: 10.1186/1471-2105-7-377] [Cited by in Crossref: 8] [Cited by in F6Publishing: 2] [Article Influence: 0.5] [Reference Citation Analysis]
20 van Nuenen MH, de Ligt RA, Doornbos RP, van der Woude JC, Kuipers EJ, Venema K. The influence of microbial metabolites on human intestinal epithelial cells and macrophages in vitro. FEMS Immunol Med Microbiol. 2005;45:183-189. [PMID: 15939578 DOI: 10.1016/j.femsim.2005.03.010] [Cited by in Crossref: 29] [Cited by in F6Publishing: 27] [Article Influence: 1.7] [Reference Citation Analysis]
21 Tuomisto TT, Riekkinen MS, Viita H, Levonen A, Ylä-herttuala S. Analysis of gene and protein expression during monocyte-macrophage differentiation and cholesterol loading—cDNA and protein array study. Atherosclerosis 2005;180:283-91. [DOI: 10.1016/j.atherosclerosis.2004.12.023] [Cited by in Crossref: 47] [Cited by in F6Publishing: 45] [Article Influence: 2.8] [Reference Citation Analysis]
22 El-Zohairy SN, Oriowo MA, Ezeamuzie CI. Cyclic Adenosine Monophosphate-Mediated Enhancement of Vascular Endothelial Growth Factor Released by Differentiated Human Monocytic Cells: The Role of Protein Kinase A. Med Princ Pract 2015;24:548-54. [PMID: 26139101 DOI: 10.1159/000433540] [Cited by in Crossref: 2] [Cited by in F6Publishing: 3] [Article Influence: 0.3] [Reference Citation Analysis]
23 Gao J, Friedrichs MS, Dongre AR, Opiteck GJ. Guidelines for the routine application of the peptide hits technique. J Am Soc Mass Spectrom 2005;16:1231-8. [PMID: 15978832 DOI: 10.1016/j.jasms.2004.12.002] [Cited by in Crossref: 46] [Cited by in F6Publishing: 45] [Article Influence: 2.7] [Reference Citation Analysis]
24 Xing S, Zheng X, Zeng T, Zeng MS, Zhong Q, Cao YS, Pan KL, Wei C, Hou F, Liu WL. Chitinase 3-like 1 secreted by peritumoral macrophages in esophageal squamous cell carcinoma is a favorable prognostic factor for survival. World J Gastroenterol 2017; 23(43): 7693-7704 [PMID: 29209110 DOI: 10.3748/wjg.v23.i43.7693] [Cited by in CrossRef: 6] [Cited by in F6Publishing: 6] [Article Influence: 1.2] [Reference Citation Analysis]
25 van der Greef J, van Wietmarschen H, van Ommen B, Verheij E. Looking back into the future: 30 years of metabolomics at TNO. Mass Spectrom Rev 2013;32:399-415. [PMID: 23630115 DOI: 10.1002/mas.21370] [Cited by in Crossref: 32] [Cited by in F6Publishing: 28] [Article Influence: 3.6] [Reference Citation Analysis]
26 Junker N, Johansen JS, Andersen CB, Kristjansen PE. Expression of YKL-40 by peritumoral macrophages in human small cell lung cancer. Lung Cancer. 2005;48:223-231. [PMID: 15829322 DOI: 10.1016/j.lungcan.2004.11.011] [Cited by in Crossref: 81] [Cited by in F6Publishing: 76] [Article Influence: 4.8] [Reference Citation Analysis]
27 Witkamp RF. Genomics and systems biology - how relevant are the developments to veterinary pharmacology, toxicology and therapeutics? J Vet Pharmacol Ther 2005;28:235-45. [DOI: 10.1111/j.1365-2885.2005.00662.x] [Cited by in Crossref: 16] [Cited by in F6Publishing: 12] [Article Influence: 0.9] [Reference Citation Analysis]
28 Sintiprungrat K, Singhto N, Sinchaikul S, Chen ST, Thongboonkerd V. Alterations in cellular proteome and secretome upon differentiation from monocyte to macrophage by treatment with phorbol myristate acetate: insights into biological processes. J Proteomics 2010;73:602-18. [PMID: 19683082 DOI: 10.1016/j.jprot.2009.08.001] [Cited by in Crossref: 38] [Cited by in F6Publishing: 37] [Article Influence: 2.9] [Reference Citation Analysis]
29 Gallant CJ, Malik S, Jabado N, Cellier M, Simkin L, Finlay BB, Graviss EA, Gros P, Musser JM, Schurr E. Reduced in vitro functional activity of human NRAMP1 (SLC11A1) allele that predisposes to increased risk of pediatric tuberculosis disease. Genes Immun 2007;8:691-8. [DOI: 10.1038/sj.gene.6364435] [Cited by in Crossref: 14] [Cited by in F6Publishing: 13] [Article Influence: 0.9] [Reference Citation Analysis]
30 Ciborowski P, Enose Y, Mack A, Fladseth M, Gendelman HE. Diminished matrix metalloproteinase 9 secretion in human immunodeficiency virus-infected mononuclear phagocytes: modulation of innate immunity and implications for neurological disease. J Neuroimmunol 2004;157:11-6. [PMID: 15579275 DOI: 10.1016/j.jneuroim.2004.08.033] [Cited by in Crossref: 27] [Cited by in F6Publishing: 27] [Article Influence: 1.6] [Reference Citation Analysis]
31 Noda T, Meas SJ, Nogami J, Amemiya Y, Uchi R, Ohkawa Y, Nishimura K, Dabdoub A. Direct Reprogramming of Spiral Ganglion Non-neuronal Cells into Neurons: Toward Ameliorating Sensorineural Hearing Loss by Gene Therapy. Front Cell Dev Biol 2018;6:16. [PMID: 29492404 DOI: 10.3389/fcell.2018.00016] [Cited by in Crossref: 19] [Cited by in F6Publishing: 16] [Article Influence: 4.8] [Reference Citation Analysis]
32 Shrestha S, McFadden MJ, Gramolini AO, Santerre JP. Proteome analysis of secretions from human monocyte-derived macrophages post-exposure to biomaterials and the effect of secretions on cardiac fibroblast fibrotic character. Acta Biomater 2020;111:80-90. [PMID: 32428683 DOI: 10.1016/j.actbio.2020.04.042] [Reference Citation Analysis]
33 Szewczyk R, Soboń A, Sylwia R, Dzitko K, Waidelich D, Długoński J. Intracellular proteome expression during 4-n-nonylphenol biodegradation by the filamentous fungus Metarhizium robertsii. International Biodeterioration & Biodegradation 2014;93:44-53. [DOI: 10.1016/j.ibiod.2014.04.026] [Cited by in Crossref: 28] [Cited by in F6Publishing: 25] [Article Influence: 3.5] [Reference Citation Analysis]
34 Ludvigsen M, Kamper P, Hamilton-dutroit SJ, Bendix K, Møller MB, d'Amore FA, Honoré B. Relationship of intratumoural protein expression patterns to age and Epstein-Barr virus status in classical Hodgkin lymphoma. Eur J Haematol 2015;95:137-49. [DOI: 10.1111/ejh.12463] [Cited by in Crossref: 6] [Cited by in F6Publishing: 5] [Article Influence: 0.8] [Reference Citation Analysis]
35 Kelly KA, Clemons PA, Yu AM, Weissleder R. High-throughput Identification of Phage-derived Imaging Agents. Mol Imaging 2006;5:7290.2006.00003. [DOI: 10.2310/7290.2006.00003] [Cited by in Crossref: 12] [Cited by in F6Publishing: 6] [Article Influence: 0.8] [Reference Citation Analysis]
36 Verhoeckx KC, Bijlsma S, Jespersen S, Ramaker R, Verheij ER, Witkamp RF, van der Greef J, Rodenburg RJ. Characterization of anti-inflammatory compounds using transcriptomics, proteomics, and metabolomics in combination with multivariate data analysis. International Immunopharmacology 2004;4:1499-514. [DOI: 10.1016/j.intimp.2004.07.008] [Cited by in Crossref: 60] [Cited by in F6Publishing: 46] [Article Influence: 3.3] [Reference Citation Analysis]
37 Emirbayer PE, Gerer KF, Hoyer S, Pischetsrieder M. Targeted label-free quantification of interleukin-8 in PMA-activated U937 cell secretome by nanoLC-ESI-MS/MS-sSRM. Proteomics 2017;17. [PMID: 28256805 DOI: 10.1002/pmic.201600455] [Cited by in Crossref: 2] [Cited by in F6Publishing: 1] [Article Influence: 0.4] [Reference Citation Analysis]
38 Mateo Anson N, Havenaar R, Bast A, Haenen GR. Antioxidant and anti-inflammatory capacity of bioaccessible compounds from wheat fractions after gastrointestinal digestion. Journal of Cereal Science 2010;51:110-4. [DOI: 10.1016/j.jcs.2009.10.005] [Cited by in Crossref: 42] [Cited by in F6Publishing: 27] [Article Influence: 3.5] [Reference Citation Analysis]
39 Breton J, Gage MC, Hay AW, Keen JN, Wild CP, Donnellan C, Findlay JB, Hardie LJ. Proteomic screening of a cell line model of esophageal carcinogenesis identifies cathepsin D and aldo-keto reductase 1C2 and 1B10 dysregulation in Barrett’s esophagus and esophageal adenocarcinoma. J Proteome Res. 2008;7:1953-1962. [PMID: 18396902 DOI: 10.1021/pr7007835] [Cited by in Crossref: 39] [Cited by in F6Publishing: 38] [Article Influence: 2.8] [Reference Citation Analysis]
40 Lambert JM, Lopez EF, Lindsey ML. Macrophage roles following myocardial infarction. Int J Cardiol. 2008;130:147-158. [PMID: 18656272 DOI: 10.1016/j.ijcard.2008.04.059] [Cited by in Crossref: 224] [Cited by in F6Publishing: 208] [Article Influence: 16.0] [Reference Citation Analysis]
41 Ringsholt M, Høgdall EV, Johansen JS, Price PA, Christensen LH. YKL-40 protein expression in normal adult human tissues--an immunohistochemical study. J Mol Histol 2007;38:33-43. [PMID: 17242979 DOI: 10.1007/s10735-006-9075-0] [Cited by in Crossref: 46] [Cited by in F6Publishing: 48] [Article Influence: 3.1] [Reference Citation Analysis]
42 Prasad A, Manoharan RR, Sedlářová M, Pospíšil P. Free Radical-Mediated Protein Radical Formation in Differentiating Monocytes. Int J Mol Sci 2021;22:9963. [PMID: 34576127 DOI: 10.3390/ijms22189963] [Reference Citation Analysis]
43 Kim TH, Ly C, Christodoulides A, Nowell CJ, Gunning PW, Sloan EK, Rowat AC. Stress hormone signaling through β-adrenergic receptors regulates macrophage mechanotype and function. FASEB J 2019;33:3997-4006. [PMID: 30509116 DOI: 10.1096/fj.201801429RR] [Cited by in Crossref: 14] [Cited by in F6Publishing: 7] [Article Influence: 3.5] [Reference Citation Analysis]
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45 Lahat N, Bitterman H, Engelmayer-Goren M, Rosenzweig D, Weiss-Cerem L, Rahat MA. Reduced TIMP-2 in hypoxia enhances angiogenesis. Am J Physiol Cell Physiol 2011;300:C557-66. [PMID: 21148412 DOI: 10.1152/ajpcell.00177.2010] [Cited by in Crossref: 11] [Cited by in F6Publishing: 12] [Article Influence: 0.9] [Reference Citation Analysis]
46 Ghavampour S, Lange C, Bottino C, Gerke V. Transcriptional profiling of human monocytes identifies the inhibitory receptor CD300a as regulator of transendothelial migration. PLoS One 2013;8:e73981. [PMID: 24058511 DOI: 10.1371/journal.pone.0073981] [Cited by in Crossref: 6] [Cited by in F6Publishing: 6] [Article Influence: 0.7] [Reference Citation Analysis]
47 Kariyawasam R, Grewal J, Lau R, Purssell A, Valencia BM, Llanos-cuentas A, Boggild AK. Influence of Leishmania RNA Virus 1 on Proinflammatory Biomarker Expression in a Human Macrophage Model of American Tegumentary Leishmaniasis. The Journal of Infectious Diseases 2017;216:877-86. [DOI: 10.1093/infdis/jix416] [Cited by in Crossref: 8] [Cited by in F6Publishing: 5] [Article Influence: 1.6] [Reference Citation Analysis]
48 Kjaersgård IV, Nørrelykke MR, Jessen F. Changes in cod muscle proteins during frozen storage revealed by proteome analysis and multivariate data analysis. Proteomics 2006;6:1606-18. [PMID: 16429459 DOI: 10.1002/pmic.200500252] [Cited by in Crossref: 58] [Cited by in F6Publishing: 47] [Article Influence: 3.6] [Reference Citation Analysis]
49 van der Werf MJ. Towards replacing closed with open target selection strategies. Trends in Biotechnology 2005;23:11-6. [DOI: 10.1016/j.tibtech.2004.11.003] [Cited by in Crossref: 34] [Cited by in F6Publishing: 30] [Article Influence: 2.0] [Reference Citation Analysis]
50 Olivetta E, Mallozzi C, Ruggieri V, Pietraforte D, Federico M, Sanchez M. HIV-1 Nef induces p47(phox) phosphorylation leading to a rapid superoxide anion release from the U937 human monoblastic cell line. J Cell Biochem 2009;106:812-22. [PMID: 19130504 DOI: 10.1002/jcb.22041] [Cited by in Crossref: 15] [Cited by in F6Publishing: 15] [Article Influence: 1.2] [Reference Citation Analysis]
51 Permana PA, Menge C, Reaven PD. Macrophage-secreted factors induce adipocyte inflammation and insulin resistance. Biochemical and Biophysical Research Communications 2006;341:507-14. [DOI: 10.1016/j.bbrc.2006.01.012] [Cited by in Crossref: 207] [Cited by in F6Publishing: 183] [Article Influence: 12.9] [Reference Citation Analysis]
52 Moritz CP, Mühlhaus T, Tenzer S, Schulenborg T, Friauf E. Poor transcript-protein correlation in the brain: negatively correlating gene products reveal neuronal polarity as a potential cause. J Neurochem 2019;149:582-604. [PMID: 30664243 DOI: 10.1111/jnc.14664] [Cited by in Crossref: 14] [Cited by in F6Publishing: 12] [Article Influence: 4.7] [Reference Citation Analysis]
53 Coffman FD. Chitinase 3-Like-1 (CHI3L1): a putative disease marker at the interface of proteomics and glycomics. Crit Rev Clin Lab Sci. 2008;45:531-562. [PMID: 19003601 DOI: 10.1080/10408360802334743] [Cited by in Crossref: 77] [Cited by in F6Publishing: 80] [Article Influence: 5.9] [Reference Citation Analysis]
54 Nordén B, Broberg P, Lindberg C, Plymoth A. Analysis and Understanding of High-Dimensionality Data by Means of Multivariate Data Analysis. C&B 2005;2:1487-94. [DOI: 10.1002/cbdv.200590120] [Cited by in Crossref: 36] [Cited by in F6Publishing: 37] [Article Influence: 2.1] [Reference Citation Analysis]
55 Filareti M, Luotti S, Pasetto L, Pignataro M, Paolella K, Messina P, Pupillo E, Filosto M, Lunetta C, Mandrioli J, Fuda G, Calvo A, Chiò A, Corbo M, Bendotti C, Beghi E, Bonetto V. Decreased Levels of Foldase and Chaperone Proteins Are Associated with an Early-Onset Amyotrophic Lateral Sclerosis. Front Mol Neurosci 2017;10:99. [PMID: 28428745 DOI: 10.3389/fnmol.2017.00099] [Cited by in Crossref: 15] [Cited by in F6Publishing: 14] [Article Influence: 3.0] [Reference Citation Analysis]
56 Marengo E, Robotti E, Bobba M, Milli A, Campostrini N, Righetti SC, Cecconi D, Righetti PG. Application of partial least squares discriminant analysis and variable selection procedures: a 2D-PAGE proteomic study. Anal Bioanal Chem. 2008;390:1327-1342. [PMID: 18224487 DOI: 10.1007/s00216-008-1837-y] [Cited by in Crossref: 29] [Cited by in F6Publishing: 25] [Article Influence: 2.1] [Reference Citation Analysis]
57 Pierce CY, Barr JR, Woolfitt AR, Moura H, Shaw EI, Thompson HA, Massung RF, Fernandez FM. Strain and phase identification of the U.S. category B agent Coxiella burnetii by matrix assisted laser desorption/ionization time-of-flight mass spectrometry and multivariate pattern recognition. Analytica Chimica Acta 2007;583:23-31. [DOI: 10.1016/j.aca.2006.09.065] [Cited by in Crossref: 39] [Cited by in F6Publishing: 27] [Article Influence: 2.6] [Reference Citation Analysis]
58 Barbero G, Carta F, Giribaldi G, Mandili G, Crobu S, Ceruti C, Fontana D, Destefanis P, Turrini F. Protein/RNA coextraction and small two-dimensional polyacrylamide gel electrophoresis for proteomic/gene expression analysis of renal cancer biopsies. Anal Biochem 2006;349:62-71. [PMID: 16307718 DOI: 10.1016/j.ab.2005.10.020] [Cited by in Crossref: 15] [Cited by in F6Publishing: 14] [Article Influence: 0.9] [Reference Citation Analysis]
59 Chicca A, Berg R, Jessen HJ, Marck N, Schmid F, Burch P, Gertsch J, Gademann K. Biological evaluation of pyridone alkaloids on the endocannabinoid system. Bioorganic & Medicinal Chemistry 2017;25:6102-14. [DOI: 10.1016/j.bmc.2017.02.031] [Cited by in Crossref: 7] [Cited by in F6Publishing: 5] [Article Influence: 1.4] [Reference Citation Analysis]
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