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World Journal of Gastroenterology
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| For: | Bennike T, Birkelund S, Stensballe A, Andersen V. Biomarkers in inflammatory bowel diseases: Current status and proteomics identification strategies. World J Gastroenterol 2014; 20(12): 3231-3244 [PMID: 24696607 DOI: 10.3748/wjg.v20.i12.3231] |
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| URL: | https://www.wjgnet.com/1007-9327/full/v20/i12/3231.htm |
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Orly Yariv, Kevin Camphausen, Andra V. Krauze. Small Bowel Dose Constraints in Radiation Therapy—Where Omics-Driven Biomarkers and Bioinformatics Can Take Us in the Future. BioMedInformatics 2024; 4(1): 158 doi: 10.3390/biomedinformatics4010011
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Tue Bjerg Bennike, Kenneth Kastaniegaard, Simona Padurariu, Michael Gaihede, Svend Birkelund, Vibeke Andersen, Allan Stensballe. Proteome stability analysis of snap frozen, RNAlater preserved, and formalin-fixed paraffin-embedded human colon mucosal biopsies. Data in Brief 2016; 6: 942 doi: 10.1016/j.dib.2016.01.061
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Lynnette R. Ferguson. Nutritional Modulation of Gene Expression: Might This be of Benefit to Individuals with Crohn’s Disease?. Frontiers in Immunology 2015; 6 doi: 10.3389/fimmu.2015.00467
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Tue Bjerg Bennike, Thomas Gelsing Carlsen, Torkell Ellingsen, Ole Kristian Bonderup, Henning Glerup, Martin Bøgsted, Gunna Christiansen, Svend Birkelund, Allan Stensballe, Vibeke Andersen. Neutrophil Extracellular Traps in Ulcerative Colitis. Inflammatory Bowel Diseases 2015; 21(9): 2052 doi: 10.1097/MIB.0000000000000460
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Tue Bjerg Bennike, Torkell Ellingsen, Henning Glerup, Ole Kristian Bonderup, Thomas Gelsing Carlsen, Michael Kruse Meyer, Martin Bøgsted, Gunna Christiansen, Svend Birkelund, Vibeke Andersen, Allan Stensballe. Proteome Analysis of Rheumatoid Arthritis Gut Mucosa. Journal of Proteome Research 2017; 16(1): 346 doi: 10.1021/acs.jproteome.6b00598
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Antonio F. Di'Narzo, Sander M. Houten, Roman Kosoy, Ruiqi Huang, Frédéric M. Vaz, Ruixue Hou, Gabrielle Wei, Wenhui Wang, Phillip H. Comella, Tetyana Dodatko, Eduard Rogatsky, Aleksandar Stojmirovic, Carrie Brodmerkel, Jacqueline Perrigoue, Amy Hart, Mark Curran, Joshua R. Friedman, Jun Zhu, Manasi Agrawal, Judy Cho, Ryan Ungaro, Marla C. Dubinsky, Bruce E. Sands, Mayte Suárez-Fariñas, Eric E. Schadt, Jean-Frédéric Colombel, Andrew Kasarskis, Ke Hao, Carmen Argmann. Integrative Analysis of the Inflammatory Bowel Disease Serum Metabolome Improves Our Understanding of Genetic Etiology and Points to Novel Putative Therapeutic Targets. Gastroenterology 2022; 162(3): 828 doi: 10.1053/j.gastro.2021.11.015
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Marianne O. Hesselager, Marius C. Codrea, Zhi Sun, Eric W. Deutsch, Tue B. Bennike, Allan Stensballe, Louise Bundgaard, Robert L. Moritz, Emøke Bendixen. The Pig PeptideAtlas: A resource for systems biology in animal production and biomedicine. PROTEOMICS 2016; 16(4): 634 doi: 10.1002/pmic.201500195
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Florent Clerc, Mislav Novokmet, Viktoria Dotz, Karli R. Reiding, Noortje de Haan, Guinevere S.M. Kammeijer, Hans Dalebout, Marco R. Bladergroen, Frano Vukovic, Erdmann Rapp, Stephan R. Targan, Gildardo Barron, Natalia Manetti, Anna Latiano, Dermot P.B. McGovern, Vito Annese, Gordan Lauc, Manfred Wuhrer, Jack Satsangi, Elaine R. Nimmo, Nicholas T. Ventham, Hazel Drummond, Rahul Kalla, Alex T. Adams, Kate O'Leary, Ray Boyapati, David C. Wilson, Victoria Merrick, Harry Campbell, Evropi Theodoratou, Igor Rudan, Nicholas A. Kennedy, Daryl L. Fernandes, Daniel I.R. Spencer, Richard A. Gardner, Archana Shubhakar, Paulina A. Urbanowicz, Irena Trbojević-Akmačić, Jasminka Krištić, Jerko Štambuk, Maja Pučić-Baković, Marija Vilaj, Marija Pezer, Genadij Razdorov, Mirna Šimurina, Olga Gornik, Giuseppe Biscaglia, Orazio Palmieri, Fabrizio Bossa, Renata D'incà, Silvio Danese, Anna Kohn, Iain K. Pemberton, Daniel Kolarich, Vlatka Zoldos, Yurii Aulchenko, Marieke Pierik, Daisy Jonkers, Tim van den Heuvel. Plasma N-Glycan Signatures Are Associated With Features of Inflammatory Bowel Diseases. Gastroenterology 2018; 155(3): 829 doi: 10.1053/j.gastro.2018.05.030
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Javier P Gisbert, María Chaparro. Clinical Usefulness of Proteomics in Inflammatory Bowel Disease: A Comprehensive Review. Journal of Crohn's and Colitis 2019; 13(3): 374 doi: 10.1093/ecco-jcc/jjy158
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Gian Eugenio Tontini, Maurizio Vecchi, Luca Pastorelli, Markus F Neurath, Helmut Neumann. Differential diagnosis in inflammatory bowel disease colitis: State of the art and future perspectives. World Journal of Gastroenterology 2015; 21(1): 21-46 doi: 10.3748/wjg.v21.i1.21
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Amandip Kaur, Paraskevi Goggolidou. Ulcerative colitis: understanding its cellular pathology could provide insights into novel therapies. Journal of Inflammation 2020; 17(1) doi: 10.1186/s12950-020-00246-4
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Tue Bjerg Bennike, Omar Barnaby, Hanno Steen, Allan Stensballe. Characterization of the porcine synovial fluid proteome and a comparison to the plasma proteome. Data in Brief 2015; 5: 241 doi: 10.1016/j.dib.2015.08.028
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Magali de Bruyn, Jennifer Vandooren, Estefania Ugarte-Berzal, Ingrid Arijs, Séverine Vermeire, Ghislain Opdenakker. The molecular biology of matrix metalloproteinases and tissue inhibitors of metalloproteinases in inflammatory bowel diseases. Critical Reviews in Biochemistry and Molecular Biology 2016; 51(5): 295 doi: 10.1080/10409238.2016.1199535
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Yan-hong Li, Wei Sun, Bao-jin Zhou, Adam Rosenstein, Jie Zhao, Jian Wang, Zhao-xiang Bian. iTRAQ-based pharmacoproteomics reveals potential targets of berberine, a promising therapy for ulcerative colitis. European Journal of Pharmacology 2019; 850: 167 doi: 10.1016/j.ejphar.2019.02.021
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Søren B Jensen, Mashhood A Sheikh, Ibrahim A Akkouh, Attila Szabo, Kevin S O’Connell, Tove Lekva, John A Engh, Ingrid Agartz, Torbjørn Elvsåshagen, Monica B E G Ormerod, Melissa A Weibell, Erik Johnsen, Rune A Kroken, Ingrid Melle, Ole K Drange, Terje Nærland, Arne E Vaaler, Lars T Westlye, Pål Aukrust, Srdjan Djurovic, Nils Eiel Steen, Ole A Andreassen, Thor Ueland. Elevated Systemic Levels of Markers Reflecting Intestinal Barrier Dysfunction and Inflammasome Activation Are Correlated in Severe Mental Illness. Schizophrenia Bulletin 2023; 49(3): 635 doi: 10.1093/schbul/sbac191
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Rígel Licier, Eric Miranda, Horacio Serrano. A Quantitative Proteomics Approach to Clinical Research with Non-Traditional Samples. Proteomes 2016; 4(4): 31 doi: 10.3390/proteomes4040031
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Yilong Lin, Wanna Xiong, Simeng Xiao, Fang Li, Zhuo Lu, Jiongyi Yan, Xuewan Fang, Xiaojuan Cui, Yilei Wen, Jianqin Liang, Kai Yu. Pharmacoproteomics reveals the mechanism of Chinese dragon's blood in regulating the RSK/TSC2/mTOR/ribosome pathway in alleviation of DSS-induced acute ulcerative colitis. Journal of Ethnopharmacology 2020; 263: 113221 doi: 10.1016/j.jep.2020.113221
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Jodi-Ann Edwards, Nicholas Tan, Nadlie Toussaint, Peiqi Ou, Cathy Mueller, Albert Stanek, Vladimir Zinsou, Sean Roudnitsky, Michelle Sagal, Lisa Dresner, Alexander Schwartzman, Chongmin Huan. Role of regenerating islet-derived proteins in inflammatory bowel disease. World Journal of Gastroenterology 2020; 26(21): 2702-2714 doi: 10.3748/wjg.v26.i21.2702
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Serena Longo, Marcello Chieppa, Luca G. Cossa, Chiara C. Spinelli, Marco Greco, Michele Maffia, Anna M. Giudetti. New Insights into Inflammatory Bowel Diseases from Proteomic and Lipidomic Studies. Proteomes 2020; 8(3): 18 doi: 10.3390/proteomes8030018
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Leanne Nantais-Smith, Mark Kadrofske. Noninvasive Biomarkers of Necrotizing Enterocolitis. Journal of Perinatal & Neonatal Nursing 2015; 29(1): 69 doi: 10.1097/JPN.0000000000000082
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Bjoern Titz, Raffaella Gadaleta, Giuseppe Lo Sasso, Ashraf Elamin, Kim Ekroos, Nikolai Ivanov, Manuel Peitsch, Julia Hoeng. Proteomics and Lipidomics in Inflammatory Bowel Disease Research: From Mechanistic Insights to Biomarker Identification. International Journal of Molecular Sciences 2018; 19(9): 2775 doi: 10.3390/ijms19092775
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Orazio Palmieri, Tommaso Mazza, Stefano Castellana, Anna Panza, Tiziana Latiano, Giuseppe Corritore, Angelo Andriulli, Anna Latiano. Inflammatory Bowel Disease Meets Systems Biology: A Multi-Omics Challenge and Frontier. OMICS: A Journal of Integrative Biology 2016; 20(12): 692 doi: 10.1089/omi.2016.0147
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Alicja Derkacz, Paweł Olczyk, Agnieszka Jura-Półtorak, Krystyna Olczyk, Katarzyna Komosinska-Vassev. The Diagnostic Usefulness of Circulating Profile of Extracellular Matrix Components: Sulfated Glycosaminoglycans (sGAG), Hyaluronan (HA) and Extracellular Part of Syndecan-1 (sCD138) in Patients with Crohn’s Disease and Ulcerative Colitis. Journal of Clinical Medicine 2021; 10(8): 1722 doi: 10.3390/jcm10081722
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Tue Bjerg Bennike, Thomas Gelsing Carlsen, Torkell Ellingsen, Ole Kristian Bonderup, Henning Glerup, Martin Bøgsted, Gunna Christiansen, Svend Birkelund, Vibeke Andersen, Allan Stensballe. Proteomics dataset: The colon mucosa from inflammatory bowel disease patients, gastrointestinal asymptomic rheumatoid arthritis patients, and controls. Data in Brief 2017; 15: 511 doi: 10.1016/j.dib.2017.09.059
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Tue Bjerg Bennike, Kenneth Kastaniegaard, Simona Padurariu, Michael Gaihede, Svend Birkelund, Vibeke Andersen, Allan Stensballe. ⿿Comparing the proteome of snap frozen, RNAlater preserved, and formalin-fixed paraffin-embedded human tissue samples. EuPA Open Proteomics 2016; 10: 9 doi: 10.1016/j.euprot.2015.10.001
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Matthew W. Rice, Jignesh D. Pandya, Deborah A. Shear. Gut Microbiota as a Therapeutic Target to Ameliorate the Biochemical, Neuroanatomical, and Behavioral Effects of Traumatic Brain Injuries. Frontiers in Neurology 2019; 10 doi: 10.3389/fneur.2019.00875
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Marisa Iborra, Belén Beltrán, Pilar Nos. Noninvasive Testing for Mucosal Inflammation in Inflammatory Bowel Disease. Gastrointestinal Endoscopy Clinics of North America 2016; 26(4): 641 doi: 10.1016/j.giec.2016.06.005
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Lucy C. Hicks, Juzheng Huang, Sacheen Kumar, Sam T. Powles, Timothy R. Orchard, George B. Hanna, Horace R.T. Williams. Analysis of Exhaled Breath Volatile Organic Compounds in Inflammatory Bowel Disease: A Pilot Study. Journal of Crohn's and Colitis 2015; 9(9): 731 doi: 10.1093/ecco-jcc/jjv102
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Alicja Derkacz, Pawel Olczyk, Katarzyna Komosinska-Vassev. Diagnostic Markers for Nonspecific Inflammatory Bowel Diseases. Disease Markers 2018; 2018: 1 doi: 10.1155/2018/7451946
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Stefan Kirov, Ariella Sasson, Clarence Zhang, Scott Chasalow, Ashok Dongre, Hanno Steen, Allan Stensballe, Vibeke Andersen, Svend Birkelund, Tue Bjerg Bennike. Degradation of the extracellular matrix is part of the pathology of ulcerative colitis. Molecular Omics 2019; 15(1): 67 doi: 10.1039/C8MO00239H
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Alexey Kozik, Marina Pavlova, Ilia Petrov, Vyacheslav Bychkov, Larissa Kim, Elena Dorozhko, Chong Cheng, Raul D. Rodriguez, Evgeniya Sheremet. A review of surface-enhanced Raman spectroscopy in pathological processes. Analytica Chimica Acta 2021; 1187: 338978 doi: 10.1016/j.aca.2021.338978
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Tue Bennike, Ugur Ayturk, Carla M. Haslauer, John W. Froehlich, Benedikt L. Proffen, Omar Barnaby, Svend Birkelund, Martha M. Murray, Matthew L. Warman, Allan Stensballe, Hanno Steen. A Normative Study of the Synovial Fluid Proteome from Healthy Porcine Knee Joints. Journal of Proteome Research 2014; 13(10): 4377 doi: 10.1021/pr500587x
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